Scaffold Ga0114973_10000431

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000431
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31651
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (79.25%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029419	Metagenome / Metatranscriptome	188	Y
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F049622	Metagenome	146	Y
F059960	Metagenome / Metatranscriptome	133	Y
F065780	Metagenome / Metatranscriptome	127	Y
F081323	Metagenome / Metatranscriptome	114	Y
F082668	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000043112	F059960	GGAG	MSKYIEALLVERAAYERRGLKDRVASVDVALREAGFDHKYMTPEIDVEVAVQEVEKETASLNRGKKKKE*
Ga0114973_1000043115	F081323	AGGA	MTNYKVISENFTLGKQGDNINGDDLEGLNVDALVDGGHLAEVNVKVLKQEPKEMDK*
Ga0114973_1000043129	F065780	GAGG	MKKLLDYLIDNTWTLAGTGLVLITLSGTTFKQAMLLTGIAIVIHSVLTFKAKD*
Ga0114973_1000043130	F049622	AGGA	MKKAQDIAQRLTALFMANALAIITGSAIVGGIPVWKAAALAGFTAVAQVAEKLARASVDGSLTTQEISDAFGGNGKKVSE*
Ga0114973_1000043131	F035302	AGG	MIRPYTGNKDGLGTGERKGLTVFIKELCKRYPALWNNGSFVNRSMRGKQGVLSVHATGRAVDLSFRFTPNHKDASNTKGIKEGGRKQAMEAMDFVVKHANEFGLECILDYFPIPHGRGWRCDRSAWSVYTKEEIHGAPMGDWIHFELSPKMADDAEAMRAAFNAIPLQAQVI*
Ga0114973_1000043132	F082668	AGG	MDSSAIVVAVIGAIGAIIVGFMQSFKKEAREANKTNSEDHAIVQSQLRMIFKTVNRVDDKLEKHINHHEEGTLNGQVIRRDTKTKA*
Ga0114973_1000043141	F029419	GAG	MNDERKGDCQGNKEKCTLTDCPKFGLLGRPFKDGNKRVKGCADPTARGKRSRTKGLSKQRVARKRLGVAPSNKFGDANEEDWQDVLFANEVKSGKQIGAVVTAWLRIDAQVRSNEADYGSRHKPTRAILMPDDWGKEGLVMIKLSTWEELVRPAMHDFYEGTA*
Ga0114973_1000043148	F036680	GGAGG	MKVTKHSLDHIELVSSGDTALFEIRLVVAMNDWSDDEAEDMGALDWLMNLLSLASNGTDITTGAQEFLKSMMTLNEERVHLCKVEKVDYNIDEIGGK*