Metagenome / Metatranscriptome Family F081323

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081323
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	56 residues
Representative Sequence	MANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKESDK
Number of Associated Samples	80
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	80.70 %
% of genes near scaffold ends (potentially truncated)	24.56 %
% of genes from short scaffolds (< 2000 bps)	69.30 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Duplodnaviria (76.316 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (26.316 % of family members)
Environment Ontology (ENVO)	Unclassified (71.930 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (68.421 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.90% β-sheet: 11.90% Coil/Unstructured: 76.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF05135	Phage_connect_1	14.04
PF05065	Phage_capsid	2.63
PF04586	Peptidase_S78	2.63
PF03354	TerL_ATPase	1.75
PF02195	ParBc	1.75
PF04860	Phage_portal	1.75
PF02467	Whib	0.88
PF12957	DUF3846	0.88
PF14791	DNA_pol_B_thumb	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	2.63
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	2.63
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	1.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	78.07 %
cellular organisms	root	All Organisms → cellular organisms	21.05 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	76.32 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.75 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	76.32 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.75 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	76.32 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.75 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	76.32 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.75 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	76.32 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.75 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	76.32 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.75 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	76.32 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.75 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.88 %
Unclassified	root	N/A	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003277\|JGI25908J49247_10000035	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	32803	Open in IMG/M
3300003499\|JGI25930J51415_1006903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2365	Open in IMG/M
3300004796\|Ga0007763_11324556	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	627	Open in IMG/M
3300005581\|Ga0049081_10012456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	3209	Open in IMG/M
3300005581\|Ga0049081_10155722	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	834	Open in IMG/M
3300005581\|Ga0049081_10236022	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	646	Open in IMG/M
3300005582\|Ga0049080_10006676	All Organisms → Viruses → Predicted Viral	4008	Open in IMG/M
3300005582\|Ga0049080_10119641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	890	Open in IMG/M
3300005583\|Ga0049085_10127270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	867	Open in IMG/M
3300005805\|Ga0079957_1003678	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12985	Open in IMG/M
3300005805\|Ga0079957_1031723	All Organisms → Viruses → Predicted Viral	3487	Open in IMG/M
3300006484\|Ga0070744_10219314	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	540	Open in IMG/M
3300006802\|Ga0070749_10123248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1521	Open in IMG/M
3300006802\|Ga0070749_10760844	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	515	Open in IMG/M
3300006805\|Ga0075464_10026419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3056	Open in IMG/M
3300007541\|Ga0099848_1126893	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	960	Open in IMG/M
3300007541\|Ga0099848_1184310	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	756	Open in IMG/M
3300007541\|Ga0099848_1247525	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	624	Open in IMG/M
3300007544\|Ga0102861_1006276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2756	Open in IMG/M
3300007734\|Ga0104986_1720	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25799	Open in IMG/M
3300007734\|Ga0104986_1732	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	26884	Open in IMG/M
3300007735\|Ga0104988_10744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25948	Open in IMG/M
3300007735\|Ga0104988_10876	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	35583	Open in IMG/M
3300007974\|Ga0105747_1009123	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2567	Open in IMG/M
3300007974\|Ga0105747_1292451	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	551	Open in IMG/M
3300009026\|Ga0102829_1103957	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	888	Open in IMG/M
3300009068\|Ga0114973_10000431	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	31651	Open in IMG/M
3300009149\|Ga0114918_10285177	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	927	Open in IMG/M
3300009159\|Ga0114978_10001661	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	18679	Open in IMG/M
3300009161\|Ga0114966_10216643	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1202	Open in IMG/M
3300009183\|Ga0114974_10011657	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6361	Open in IMG/M
3300010354\|Ga0129333_10687359	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	881	Open in IMG/M
3300011116\|Ga0151516_10632	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16424	Open in IMG/M
3300011995\|Ga0153800_1040414	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502	Open in IMG/M
3300012012\|Ga0153799_1015764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1587	Open in IMG/M
3300012013\|Ga0153805_1047761	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	726	Open in IMG/M
3300012013\|Ga0153805_1071738	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	587	Open in IMG/M
3300012763\|Ga0138289_1175163	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	791	Open in IMG/M
3300013004\|Ga0164293_11061665	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502	Open in IMG/M
3300013005\|Ga0164292_10788049	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	601	Open in IMG/M
(restricted) 3300013122\|Ga0172374_1147937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	870	Open in IMG/M
(restricted) 3300013123\|Ga0172368_10449643	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	570	Open in IMG/M
3300013372\|Ga0177922_10034596	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	688	Open in IMG/M
3300013372\|Ga0177922_10331932	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	778	Open in IMG/M
3300013372\|Ga0177922_10571084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1645	Open in IMG/M
3300013372\|Ga0177922_10628166	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	547	Open in IMG/M
3300013372\|Ga0177922_11326591	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	698	Open in IMG/M
3300014819\|Ga0119954_1005846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3175	Open in IMG/M
3300017701\|Ga0181364_1014602	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1310	Open in IMG/M
3300017723\|Ga0181362_1056899	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	807	Open in IMG/M
3300017723\|Ga0181362_1057324	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	804	Open in IMG/M
3300017736\|Ga0181365_1000466	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9103	Open in IMG/M
3300017736\|Ga0181365_1158763	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	534	Open in IMG/M
3300017747\|Ga0181352_1017004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2283	Open in IMG/M
3300017774\|Ga0181358_1052132	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1545	Open in IMG/M
3300017774\|Ga0181358_1252854	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	554	Open in IMG/M
3300017777\|Ga0181357_1289910	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	559	Open in IMG/M
3300017778\|Ga0181349_1278305	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	549	Open in IMG/M
3300017778\|Ga0181349_1303171	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	517	Open in IMG/M
3300017780\|Ga0181346_1005267	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5633	Open in IMG/M
3300017780\|Ga0181346_1174974	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	789	Open in IMG/M
3300017784\|Ga0181348_1110388	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1065	Open in IMG/M
3300017785\|Ga0181355_1061843	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1580	Open in IMG/M
3300017785\|Ga0181355_1081840	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1348	Open in IMG/M
3300017785\|Ga0181355_1288676	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	619	Open in IMG/M
3300017788\|Ga0169931_10211608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1636	Open in IMG/M
3300017963\|Ga0180437_10002021	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	33580	Open in IMG/M
3300018416\|Ga0181553_10272554	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	951	Open in IMG/M
3300019784\|Ga0181359_1000062	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	20987	Open in IMG/M
3300019784\|Ga0181359_1009832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3371	Open in IMG/M
3300019784\|Ga0181359_1014770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2875	Open in IMG/M
3300019784\|Ga0181359_1027508	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2185	Open in IMG/M
3300019784\|Ga0181359_1110397	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	997	Open in IMG/M
3300019784\|Ga0181359_1175000	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	714	Open in IMG/M
3300019784\|Ga0181359_1189225	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	672	Open in IMG/M
3300019784\|Ga0181359_1222833	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	592	Open in IMG/M
3300019784\|Ga0181359_1252088	Not Available	535	Open in IMG/M
3300020074\|Ga0194113_10468697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	911	Open in IMG/M
3300020172\|Ga0211729_10142142	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	900	Open in IMG/M
3300020183\|Ga0194115_10134437	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1314	Open in IMG/M
3300020205\|Ga0211731_10477075	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	648	Open in IMG/M
3300020221\|Ga0194127_10308166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1069	Open in IMG/M
3300020507\|Ga0208697_1039834	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	507	Open in IMG/M
3300021961\|Ga0222714_10366058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300022752\|Ga0214917_10017646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6037	Open in IMG/M
3300022752\|Ga0214917_10066261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2306	Open in IMG/M
3300023179\|Ga0214923_10008090	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11296	Open in IMG/M
3300024262\|Ga0210003_1317429	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	591	Open in IMG/M
3300024433\|Ga0209986_10187176	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1042	Open in IMG/M
3300024542\|Ga0256350_1066941	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	639	Open in IMG/M
3300025896\|Ga0208916_10004606	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5453	Open in IMG/M
3300027754\|Ga0209596_1139634	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1090	Open in IMG/M
3300027759\|Ga0209296_1075634	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1673	Open in IMG/M
3300027763\|Ga0209088_10148856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1036	Open in IMG/M
3300027798\|Ga0209353_10262442	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	740	Open in IMG/M
3300027971\|Ga0209401_1000351	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	31650	Open in IMG/M
3300028269\|Ga0255193_1054971	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	540	Open in IMG/M
3300031565\|Ga0307379_10190353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2111	Open in IMG/M
3300031669\|Ga0307375_10364503	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	907	Open in IMG/M
3300031772\|Ga0315288_11690522	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	511	Open in IMG/M
3300032173\|Ga0315268_10273696	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1630	Open in IMG/M
3300033981\|Ga0334982_0060252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2074	Open in IMG/M
3300033981\|Ga0334982_0164897	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1119	Open in IMG/M
3300033981\|Ga0334982_0165860	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1115	Open in IMG/M
3300033995\|Ga0335003_0067681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1893	Open in IMG/M
3300034062\|Ga0334995_0201407	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1383	Open in IMG/M
3300034063\|Ga0335000_0083889	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2205	Open in IMG/M
3300034071\|Ga0335028_0249778	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1074	Open in IMG/M
3300034096\|Ga0335025_0000445	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	32206	Open in IMG/M
3300034104\|Ga0335031_0790317	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	533	Open in IMG/M
3300034117\|Ga0335033_0492922	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	587	Open in IMG/M
3300034122\|Ga0335060_0198684	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1141	Open in IMG/M
3300034122\|Ga0335060_0544740	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	591	Open in IMG/M
3300034279\|Ga0335052_0324414	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	843	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.25%
Terrestrial	Environmental → Terrestrial	1.75%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	81.58%
Marine	Environmental → Aquatic → Marine	15.79%
Soil	Environmental → Terrestrial → Soil	1.75%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.88%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	45.61%
Lentic	Environmental → Aquatic → Freshwater → Lentic	32.46%
Coastal	Environmental → Aquatic → Marine → Coastal	8.77%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.63%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.63%
River	Environmental → Aquatic → Freshwater → River	1.75%
Ice	Environmental → Aquatic → Freshwater → Ice	1.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.75%
Clay	Environmental → Terrestrial → Soil → Clay	1.75%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	43.86%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	31.58%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	8.77%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	2.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.75%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.75%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.75%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.88%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.88%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	26.32%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	18.42%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	13.16%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	6.14%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	5.26%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.63%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	2.63%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	1.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.75%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.75%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	1.75%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.75%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.75%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.75%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.88%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.88%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.88%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.88%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003499	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN	Environmental	Open in IMG/M
3300004796	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M
3300007734	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan	Environmental	Open in IMG/M
3300007735	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct	Environmental	Open in IMG/M
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental	Open in IMG/M
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300011116	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov	Environmental	Open in IMG/M
3300011995	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m	Environmental	Open in IMG/M
3300012012	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m	Environmental	Open in IMG/M
3300012013	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice	Environmental	Open in IMG/M
3300012763	Freshwater microbial communities from Lake Simoncouche, Canada - S_140108_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013122 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3m	Environmental	Open in IMG/M
3300013123 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11m	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300014819	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental	Open in IMG/M
3300017963	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG	Environmental	Open in IMG/M
3300018416	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300020221	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100m	Environmental	Open in IMG/M
3300020507	Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental	Open in IMG/M
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental	Open in IMG/M
3300024542	Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027971	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028269	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepA_8h	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034063	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053	Environmental	Open in IMG/M
3300034071	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110	Environmental	Open in IMG/M
3300034096	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034117	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124	Environmental	Open in IMG/M
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental	Open in IMG/M
3300034279	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25908J49247_1000003517	3300003277	Freshwater Lake	MTNYKVISDNCTLGKQGDNINGDDLEGLNVDALVAGGHLAEVNVKVLKQEPKEMDK*
JGI25930J51415_10069033	3300003499	Freshwater Lake	MANYKVMSENCTLGKQGATLSADDLQGFNIDALVDGGHLAEVNVKVPKQDTKETDK*
Ga0007763_113245562	3300004796	Freshwater Lake	MPNYKVMTDRCALGKQGATISGDDLEGFNLDALVEGGHLAEVNVKVPKQDTKETDK*
Ga0049081_100124563	3300005581	Freshwater Lentic	MANYKVMSENCTLGKQGATLSADDLQGFNIDALVDGGHLAEVNVKVPKQDTKESDK*
Ga0049081_101557222	3300005581	Freshwater Lentic	MANYKVISENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVLKQDTKETDK*
Ga0049081_102360221	3300005581	Freshwater Lentic	MANYKVMSENCSLGKQGATLSADDLEGFNIDALLDGGHLAEVNVKVPKQDTKESDK*
Ga0049080_100066765	3300005582	Freshwater Lentic	MTNYKVISDNCTLGKQGDNINGDDLEGLNVDALVDGGHLAEVNVKVAKQEPKEMDK*
Ga0049080_101196412	3300005582	Freshwater Lentic	MANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVLKQDTKETDK*
Ga0049085_101272702	3300005583	Freshwater Lentic	MPNYKIMSDNCTLGKQGENINGDDLEGLNVQALVDGGHLAEVNVKVSKQEPKEMDK*
Ga0079957_10036787	3300005805	Lake	MANYKIISENCTLGAQGSNISSDDLEGLNVDALVEGGHLAEVNVKVSKQEPKESDK*
Ga0079957_10317235	3300005805	Lake	MANYKVMSDKCSLGKQGATLSADDLEGFNVDALIDGGHLAEVNVKVFKQDTKETDK*
Ga0070744_102193142	3300006484	Estuarine	MANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKESDK*
Ga0070749_101232483	3300006802	Aqueous	MANYKVISENCTLGKQGTTLNADDLQGFNINALVDGGHLAEVNVKVPKQDTKESDK*
Ga0070749_107608441	3300006802	Aqueous	RVFTNTIPSNSSRIGQIMANYKVMSENCTLGKQGATLSADDLQGFNIDALVDGGHLAEVNVKVPKQDTKESDK*
Ga0075464_100264195	3300006805	Aqueous	MANYKVMSENCTLGKQGETISAEDLDGVNVDALLDGGHLAEVNVKVLKQDTKETDK*
Ga0099848_11268933	3300007541	Aqueous	SRIGQIMANYKVMSENCTLGKQGATLSADDLQGFNIDALVDGGHLAEVNVKVPKQDNKESDK*
Ga0099848_11843103	3300007541	Aqueous	MANYKVMSENCTLGKQGATLSADDLQGFNIDALIDGGHLAEVNVKVPKQDTKESDK*
Ga0099848_12475251	3300007541	Aqueous	TLGAQGSNISSDDLEGLNIAALVEGGHLAEVNVKVSKQEPKESDK*
Ga0102861_10062764	3300007544	Estuarine	MANYKIISENCTLGTQGSNISGDDLEGVNVDALIEGGHLAEVNVKVSKQEPKESDK*
Ga0104986_172041	3300007734	Freshwater	MANYKIISENCTLGAQGSNISSDDLEGLNVAALVDGGHLAEVNVKVSKQEPKESDK*
Ga0104986_17327	3300007734	Freshwater	MATYKVLSENCTLGKQGDTVNGDELEAQGVNVVALLDGGHLSEVNVKVLKQEPKEMDK*
Ga0104988_1074441	3300007735	Freshwater	MANYKIISENCTLGAQGSNISGDDLEGLNVDALVEGGHLAEVNVKVSKQEPKESDK*
Ga0104988_108761	3300007735	Freshwater	SSRIGQTMANYKIISENCTLGAQGSNISGDDLEGLNVDALVEGGHLAEVNVKVSKQEPKESDK*
Ga0105747_10091231	3300007974	Estuary Water	TVPSNSSRIGQTMANYKIISENCTLGAQGSNISSDDLEGLNIAALVEGGHLAEVNVKVSKQEPKESDK*
Ga0105747_12924512	3300007974	Estuary Water	MSNYKIMSDNCTLGKQGENINGDDLEGLNVQALVDGGHLAEVNVKVSKQE
Ga0102829_11039571	3300009026	Estuarine	TIPSNGSRIGHQMANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVSKQEPKEMDK*
Ga0114973_1000043115	3300009068	Freshwater Lake	MTNYKVISENFTLGKQGDNINGDDLEGLNVDALVDGGHLAEVNVKVLKQEPKEMDK*
Ga0114918_102851771	3300009149	Deep Subsurface	MPNYKVMTDRCSLGKQGATISGDDLDGVNVAALVEGGHLAEVNVKVPKQDTKETDK*
Ga0114978_100016619	3300009159	Freshwater Lake	MANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKETDK*
Ga0114966_102166434	3300009161	Freshwater Lake	MANYKILSDNCTLGVQGTNISGDDLEGFNVDALVDGGHLAEVNVKIYKQDTKESDK*
Ga0114974_100116577	3300009183	Freshwater Lake	MTNYKVISENFTLGKQGDNINGDDLEGLNVDALIDGGHLAEVNVKVLKQEPKEMDK*
Ga0129333_106873592	3300010354	Freshwater To Marine Saline Gradient	MANYKIISENCTLGAQGSNISSDDLEGLNIAALVEGGHLAEVNVKVSKQEPKESDK*
Ga0151516_1063210	3300011116	Freshwater	MANYKIISENCTLGAQGSNISSDDLEGLNVAALVEGGHLAEVNVKVSKQEPKESDK*
Ga0153800_10404142	3300011995	Freshwater	NSSRIGQQMPNYKVMTDKCALGKQGATISGDDLEGFNLDALVEGGHLAEVNVKVPKQDTKETDK*
Ga0153799_10157642	3300012012	Freshwater	MANYKVISDNCTLGKQGATVSADDLQGFNIDALIDGGHLAEVNVKVPKQDTKESDK*
Ga0153805_10477613	3300012013	Surface Ice	GQIMANYKVISDNCTLGKQGATVSADDLQGFNIDALIDGGHLAEVNVKVPKQDTKESDK*
Ga0153805_10717382	3300012013	Surface Ice	MPNYKVMTDKCALGKQGATISSDDLEGFNLDALVEGGHLAEVNVKVSKQEPKESDK*
Ga0138289_11751632	3300012763	Freshwater Lake	MANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGQLAEVNVKVPKQDTKESDK*
Ga0164293_110616652	3300013004	Freshwater	MTNYKVISDNCTLGKQGDNINGDDLEGFNVDALVDGGHLAEVNVKVIKQESKETDK*
Ga0164292_107880491	3300013005	Freshwater	GQQMPNYKVMTDRCALGKQGATISGDDLEGFNLDALVEGGHLAEVNVKVPKQDTKETDK*
(restricted) Ga0172374_11479372	3300013122	Freshwater	MANYKVISENCTLGAQGTNISGDDLEGLNVAALLDGGHLAEVNVKVSKQDSKESDK*
(restricted) Ga0172368_104496432	3300013123	Freshwater	MANYKVISENCTLGAQGTNISGDDLEGLNVAALLDGGHLAEVNVKVSK
Ga0177922_100345961	3300013372	Freshwater	TLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKETDK*
Ga0177922_103319321	3300013372	Freshwater	MPNYKVMTDKCALGKQGATISSDDLEGFNLDALVESGHLAEVNVKVSKQEPKESDK*
Ga0177922_105710843	3300013372	Freshwater	MANYKIVSENCTLGAQGSNISGDDLEGLNIAALVEGGHLAEVNVKVSKQEPKESDK*
Ga0177922_106281662	3300013372	Freshwater	MTNYKVISDNCTLGKQGDNINGDDLEGFNVDALVDGGHLAEVNVKVSKQEPKEMDK*
Ga0177922_113265912	3300013372	Freshwater	MANYKIISENCTLGAQGSNISSDDLAGLNVDALIDGGHLAEVNVKVSKQEPKESDK*
Ga0119954_10058465	3300014819	Freshwater	MANYKIISENCTLGAQGSNISGDDLEGLNVDALVEGGHLAEINVKVSKQEPKESDK*
Ga0181364_10146024	3300017701	Freshwater Lake	LCWCRLYSMTAYRILSDNCTLGKQGETISADDLNDVNVDALLDGGHLAEVNVKIPKQDMKESDK
Ga0181362_10568992	3300017723	Freshwater Lake	MAKYKVMGENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVSKQDTKETDK
Ga0181362_10573242	3300017723	Freshwater Lake	MTQYKIMSDNFSLGKQGATVDGDDLESLNVQALVDGGHLLEVNVKVVKQEQKEMDK
Ga0181365_10004667	3300017736	Freshwater Lake	MTAYRILSDNCTLGKQGEMISADDLNDVNVDALLDGGHLAEVNVKIPKQDMKESDK
Ga0181365_11587632	3300017736	Freshwater Lake	RVFTNTIPSNGSRIGHQMANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKESDK
Ga0181352_10170044	3300017747	Freshwater Lake	MANYKVMSENCTLGKQGATLNADDLQGFNIDALVDGGHLAEVNVKVPKQDTKESDK
Ga0181358_10521324	3300017774	Freshwater Lake	TNTIPSNGSRIGHQMANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVLKQDTKETDK
Ga0181358_12528541	3300017774	Freshwater Lake	NTIPSNGSRIGHQMANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKESDK
Ga0181357_12899101	3300017777	Freshwater Lake	MTSYRIQSDNCTLGKQGETISADDLNGLNVDALLDGGHLAEANVKVPKQDTTERDK
Ga0181349_12783052	3300017778	Freshwater Lake	MPNYKIMSDNCTLGKQGENINGDDLEGLNIQALVDGGHLAEVNVKVSKQEPKEMDK
Ga0181349_13031711	3300017778	Freshwater Lake	MTAYRILSDNCTLGKQGEMISADDLNDVNVDALLDGGHLAEVNVKIPKQDTKESEK
Ga0181346_10052676	3300017780	Freshwater Lake	MPNYKVMSENCTLGAQGATISADDLEGVNVDALVEGGHLAEVNVKVTKQDTKEMDK
Ga0181346_11749741	3300017780	Freshwater Lake	RVFTNTIPSNGSRIGHQMANYKVMSENCSLGKQGATLSADDLQGFNIDALLDGGHLAEVNVKVPKQDTKESDK
Ga0181348_11103883	3300017784	Freshwater Lake	MSNYKIMSDNCTLGKQGENINGDDLEGLNVQALVDGGHLAEVNVKVSKQEPKEMDK
Ga0181355_10618431	3300017785	Freshwater Lake	MTQYKIMSDNFSLGKQGATVDGDDLESLNIQALVDDGHLLEVNVKVVKQEQKEMDK
Ga0181355_10818402	3300017785	Freshwater Lake	MTNYKVISDNCTLGKQGDNINGDDLEGLNVNALVDGGHLAEVNVKVAKQEPKEMDK
Ga0181355_12886762	3300017785	Freshwater Lake	MTAYRILSDNCTLGKQGETISADDLNDVNVDALVEGGHLAEVNVKIPKQDMKESDK
Ga0169931_102116082	3300017788	Freshwater	MANYKVISENCTLGAQGTNISGDDLEGLNVAALLDGGHLAEVNVKVSKQDSKESDK
Ga0180437_1000202148	3300017963	Hypersaline Lake Sediment	MANYKVMSENCTLGKQGATLSADDLQGFNIDALVDGGHLAEVNVKVPKQDTKESDK
Ga0181553_102725543	3300018416	Salt Marsh	MANYKIISENCTLGAQGSNISSDDLEGLNVDALVEGGHLAEVNVKVSKQEPKESDK
Ga0181359_10000624	3300019784	Freshwater Lake	MTNYKVISDNCTLGKQGDNINGDDLEGLNVDALVAGGHLAEVNVKVLKQEPKEMDK
Ga0181359_10098323	3300019784	Freshwater Lake	MPNYKVMSENCTLGQQGATISADDLEGVNVDALVEGGHLAEVNVKVTKQDTKEMDK
Ga0181359_10147705	3300019784	Freshwater Lake	MANYKVMSENCSLGKQGATLSADDLEGFNIDALLDGGHLAEVNVKVTKQDTKETDK
Ga0181359_10275082	3300019784	Freshwater Lake	MANYKVMSENCTLGKQGATLSADDLQGFNIDALVDGGHLAEVNVKVPKQDTKETDK
Ga0181359_11103973	3300019784	Freshwater Lake	MTNYKVISDNCTLGKQGDNINGDDLEGLNVDALVDGGHLAEVNVKVAKQEPKEMDK
Ga0181359_11750003	3300019784	Freshwater Lake	TDNCTLGKQGETISADDLNDVNVDALLDGGHLAEVNVKIPKQDMKESDK
Ga0181359_11892253	3300019784	Freshwater Lake	MTAYRILSDNCTLGKQGETISADDLNDVNVDALLDGGHLAEVNVKIPKQ
Ga0181359_12228331	3300019784	Freshwater Lake	MANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVLKQDTKETDK
Ga0181359_12520882	3300019784	Freshwater Lake	MTQYKIMSDNFSLGKQGATVDSDDLESLNVQALVDGGHLLEVNVKVVKQEQKEMDK
Ga0194113_104686973	3300020074	Freshwater Lake	MANYKILSDNFVLGKQGTNISGDDLEGLNVAALIEGGHLAEVNVKVLKQDSKESDK
Ga0211729_101421423	3300020172	Freshwater	MPNYKVMTDRCALGKQGATISGDDLEGINVDALVEGGHLAEVNVKVPKQDTKETDK
Ga0194115_101344372	3300020183	Freshwater Lake	MPNYKVTSENCTLGAKGTNISGDDLEGLNVAALLDGGHLAEVNVKVSKQDSKESDK
Ga0211731_104770752	3300020205	Freshwater	MANYKVMTDRCALGKQGATISGDDLEGINVDALVEGGHLAEVNVKVPKQDTKETDK
Ga0194127_103081661	3300020221	Freshwater Lake	MANYKILSDNFVLGKQGTNISGDDLEGLNVAALIEGGHLAEVNVK
Ga0208697_10398342	3300020507	Freshwater	TDKCALGKQGATISGDDLEGFNLDALVEGGHLAEVNVKVSKQEPKESDK
Ga0222714_103660582	3300021961	Estuarine Water	MANYKIISENCTLGAQGSNISGDDLEGLNVDALVEGGHLAEVNVKVSKQEPKESDK
Ga0214917_100176464	3300022752	Freshwater	MMANYKIISENCTLGAQGSNISGDDLEGLNVDALVEGGHLAEVNVKVSKQEPKESDK
Ga0214917_100662614	3300022752	Freshwater	MANYKIISENCTLGAQGSNISGDDLEGLNVDALLDGGHLAEVNVKVLKQDTKETDK
Ga0214923_100080909	3300023179	Freshwater	MANYKVISDNCTLGAQGTNISGDDLEGLNVDALVEGGHLAEVNVKVSKQEPKESDK
Ga0210003_13174292	3300024262	Deep Subsurface	MPNYKVMTDRCSLGKQGATISGDDLDGVNVAALVEGGHLAEVNVKVPKQDTKETDK
Ga0209986_101871763	3300024433	Deep Subsurface	TDTVPSNSSRIGQRMPNYKVMSENCTLGKKGATISADDLDGVNVAALVEGGHLAEVNVKVLKQDTKETDK
Ga0256350_10669412	3300024542	Freshwater	MANYKVMSENCTLGKQGATLSADDLEGFNIDALIDGGHLAEVNVKVPKQDTKESDK
Ga0208916_100046065	3300025896	Aqueous	MANYKVMSENCTLGKQGETISAEDLDGVNVDALLDGGHLAEVNVKVLKQDTKETDK
Ga0209596_11396342	3300027754	Freshwater Lake	MANYKILSDNCTLGVQGTNISGDDLEGFNVDALVDGGHLAEVNVKIYKQDTKESDK
Ga0209296_10756342	3300027759	Freshwater Lake	MTNYKVISENFTLGKQGDNINGDDLEGLNVDALIDGGHLAEVNVKVLKQEPKEMDK
Ga0209088_101488563	3300027763	Freshwater Lake	MANYKVMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKESDK
Ga0209353_102624423	3300027798	Freshwater Lake	VMSENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVSKQDTKETDK
Ga0209401_100035115	3300027971	Freshwater Lake	MTNYKVISENFTLGKQGDNINGDDLEGLNVDALVDGGHLAEVNVKVLKQEPKEMDK
Ga0255193_10549712	3300028269	Freshwater	NYKIISENCTLGAQGSNISGDDLEGVNVDALIEGGHLAEVNVKVSKQEPKESDK
Ga0307379_101903534	3300031565	Soil	MPNYKVMSENCTLGKKGSTISADDLDGVNVAALVEGGHLAEVNVKVPKQDTKETDK
Ga0307375_103645032	3300031669	Soil	MPNYKVMSENCTLGKKGATISADDLDGVNVAALVEGGHLAEVNVKVPKQDTKETDK
Ga0315288_116905222	3300031772	Sediment	MANYKVMSENCTLGKQGETISADDLVGVNIDALLDGGHLAEVNVKVPKQDTKESDK
Ga0315268_102736964	3300032173	Sediment	MANYKVISENCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKESDK
Ga0334982_0060252_60_230	3300033981	Freshwater	MTNYKVVSDNCTLGKQGDNINGDDLEGFNVDALVAGGHLAEVNVKVAKQEPKEMDK
Ga0334982_0164897_174_344	3300033981	Freshwater	MANYKVMSENCALGKQGATLSADDLEGFNIDALLDGGHLAEVNVKVPKQDTKESDK
Ga0334982_0165860_272_442	3300033981	Freshwater	MTTYKVLSNKCTLGKQGDSINGDDFEGFNVAALVDGGHLAEVNVKVIKQESKETDK
Ga0335003_0067681_3_149	3300033995	Freshwater	MTNYKVISDNCTLGKQGDNINGDDLEGFNVDALVDGGHLAEVNVKVAKQ
Ga0334995_0201407_159_329	3300034062	Freshwater	MTTYKVLSDKCTLGKQGDSINGDDFEGFNIAALVDGGHLAEVNVKVIKQESKETDK
Ga0335000_0083889_509_679	3300034063	Freshwater	MANYKVMTDKCALGKQGATISGDDLEGFNLDALLDGGHLAEVNVKVSKQEPKESDK
Ga0335028_0249778_682_852	3300034071	Freshwater	MANYKVISDNCTLGKQGETISADDLVGVNVDALLDGGHLAEVNVKVPKQDTKESDK
Ga0335025_0000445_2570_2740	3300034096	Freshwater	MPNYKVMTDRCALGKQGATISGDDLEGFNLDALVEGGHLAEVNVKVPKQDTKETDK
Ga0335031_0790317_148_318	3300034104	Freshwater	MTAYKVLSDKCTLGKQGDSINGDDFEGFNIAALVDGGHLAEVNVKVIKQESKETDK
Ga0335033_0492922_3_161	3300034117	Freshwater	KVISDNCTLGKQGDNINGDDLEGFNVDALVDGGHLAEVNVKVAKQEPKEMDK
Ga0335060_0198684_972_1139	3300034122	Freshwater	TNYKVISDNCTLGKQGDNINGDDLEGFNVDALVDGGHLAEVNVKVAKQEPKEMDK
Ga0335060_0544740_97_267	3300034122	Freshwater	MTNYKVISENCTLGKQGDNINGDDLEGLNVDALVDGGHLAEVNVKVAKQEPKEMDK
Ga0335052_0324414_324_494	3300034279	Freshwater	MTNYKVISDNCTLGKQGDNINGDDLEGFNVDALVAGGHLAEVNVKVAKQEPKEMDK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters