Scaffold Ga0114973_10000393

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000393
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32776
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010766	Metagenome / Metatranscriptome	299	Y
F023106	Metagenome / Metatranscriptome	211	Y
F024789	Metagenome / Metatranscriptome	204	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000039314	F010766	GGA	MRIKIIRFVVKALGYEWGGDKLNAPIWTVKAKKKN*
Ga0114973_1000039354	F024789	GGA	MKEPKITQMDWRSLGYWPVYKNEKKIWVPKDDKSFDKD*
Ga0114973_1000039358	F066789	N/A	MKWYDVYMTCTKYGCDYQLDLDGQVTCAVCGAMDDDASTPITLDMFEAQVDFE*
Ga0114973_1000039365	F023106	GGA	MRISRRVTEEEKVANKLGNTISDLRVDLELVGEYIAKSQPYVVYNRLQVIAESAKETKEGTNYASNNF*