Scaffold Ga0104241_1001038

Overview

Basic Information

• Taxon OID: 3300008953
• Scaffold ID: Ga0104241_1001038
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2197
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F006744	Metagenome / Metatranscriptome	365	Y
F015208	Metagenome / Metatranscriptome	256	Y
F029434	Metagenome / Metatranscriptome	188	Y
F074868	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104241_10010381	F074868	AGGTGG	MTTLNKTNIGLALGISGALENRILHDWNNGGCKSTYGLSVWQRKVLLKVLIGENPKCFCVNCLEVK*
Ga0104241_10010383	F029434	AGG	MKKYTFGVWLDIDAEDEDMALSMFDDVTKNLWVKDSYCFEWKEVE*
Ga0104241_10010385	F002598	AGAAGG	MATKCYTIENLLVGKNYRSISRHFSGEIVSAEPRPEIWYGEKTEAFLIEVNAGGLRNKFATIAVKVGE*
Ga0104241_10010386	F000447	GAG	MGYIEFARINEEGVSWVDLSKATPEELLEIEIGLFQEGAI*
Ga0104241_10010387	F006744	AGG	MNLEEFKKHVLDQREASKAQALSVLSATIAKSNERKEN*
Ga0104241_10010389	F015208	GGA	MYKITVTYDEAKSPNFAFEYSDELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVEK*