Scaffold Ga0104245_1002726

Overview

Basic Information

• Taxon OID: 3300008686
• Scaffold ID: Ga0104245_1002726
• Source Dataset Name: Food microbial communities from the fermentation process of Kimchi from South Korea - J7
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Chung-Ang Univiersity
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 653
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Ophiocordycipitaceae → Ophiocordyceps → Ophiocordyceps sinensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Fermented Vegetables → Food Microbial Communities From The Fermentation Process Of Kimchi From South Korea

Source Dataset Sampling Location

• Location Name: South Korea
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013050	Metagenome / Metatranscriptome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104245_10027262	F013050	AGG	MSKGKQPRTRVKVPKLLLSENKEVFFKYNQEIGLEAAIF*