Scaffold Ga0114350_1002364

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1002364
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12906
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F013526	Metagenome / Metatranscriptome	270	Y
F017484	Metagenome / Metatranscriptome	240	Y
F026861	Metagenome / Metatranscriptome	196	Y
F029721	Metagenome / Metatranscriptome	187	Y
F034902	Metagenome / Metatranscriptome	173	Y
F049499	Metagenome	146	Y
F081257	Metagenome / Metatranscriptome	114	Y
F085710	Metagenome / Metatranscriptome	111	Y
F099312	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100236411	F081257	AGGA	MKTLSYTAEKDGIEVEVLNRLMVSEYQINDLLDRLVANGYTILTTEIGDGDYSQHWQG*
Ga0114350_100236413	F017484	AGGAG	MGSLEIFEINENGAGWVSLENASASAKLDLELALLTKAEMKMLCFKCHVEIPRGNVCVNHKNVKGAVYFE*
Ga0114350_100236414	F013526	AGGAG	LSKKNVLISFVTDAETDLDAIFALNKVMYKLPESDAVKFDAFEILNVVE*
Ga0114350_100236415	F085710	AGGA	MDYLDYQDEIYLDIYLEFGAEAVTDPAYAEELLSKSQF*
Ga0114350_100236417	F026861	AGGA	MKLDEFKKLIEAQRQEIKLTNLEKIAKIVETTTKKGNN*
Ga0114350_100236421	F029721	AGGAG	MRSYSIEDLLVGQFYKPASLARRFFGGEIDFAEKRDDVWVGENYQAYSIRYRVSNSMKTEWATIAVKVSDL*
Ga0114350_100236423	F005092	AGGA	MNKMDKLEMALRLIANCQLCNGRGYDYWANGEDFDAEPCQCNIYDIILDEDGDVIYDNGLSTQYDLSIYATAEAN*
Ga0114350_100236426	F049499	AGG	MSATIIDMDYRLVDTLNSDQLEPDDLIGLGDEVVKIISISSLRHGYLLTYENEFGERDILEIGDEEIFELYILE*
Ga0114350_100236431	F034902	AGGA	MISTALAIQEATRDAVHDDEVMSMAAAIYHARHEVSEDDFIRMMYMYSAHLSAMTATLVTHACLTESQLNDMLETIKEMETMGKDIE*
Ga0114350_100236435	F099312	GGA	MSKESFLENENQMVIDAIYQEIGEQLVEDWVNSNLDEGQMY