Scaffold Ga0114340_1007121

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1007121
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8235
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (95.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F080046	Metagenome / Metatranscriptome	115	Y
F081245	Metagenome / Metatranscriptome	114	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100712110	F080046	AGGAG	MSLSLANKIAKDKFFLPPSKYINHKVVEIVSLNEDSGIATVILEKYTIGKNANVYKNNNVFTIELPYSEFQNLNGWSE*
Ga0114340_10071214	F085710	AGGAG	MDYNEYYDEIYLEIYEEFGAESVSDPAYAESLKK*
Ga0114340_10071218	F003965	AGGA	MNSTIIKCVEHTPFKSAISEVADTQFTFCEICENNIERWYNDTDPERLPMWTDWKVSK*
Ga0114340_10071219	F081245	GGA	MIDFVKQLELENYLADEQVDPLAKMLDELIKKGEYK*