Scaffold Ga0114340_1000495

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000495
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63059
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (77.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001433	Metagenome	695	Y
F013751	Metagenome / Metatranscriptome	268	Y
F017801	Metagenome	238	N
F034551	Metagenome	174	Y
F065551	Metagenome	127	Y
F076858	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100049520	F034551	AGGAG	VAVEMTDFEQGVWDYLVSHPKTPVQAKTIAKEWIVSENRVARTLNRFVENGIADLIRMGAKKFYRVKE*
Ga0114340_100049529	F065551	AGGAG	MKTSWWYESGMAAEAAQELVWFVVIVFVGIGLLIWNDIRKDKRDGKK*
Ga0114340_100049536	F076858	GGAGG	MREFAEFLRMFNDALGLILIAFCVYFLACIVMGRGDGE*
Ga0114340_100049557	F013751	N/A	MQYDVLATKPLGLTGNFKDQGNNDIPRCRVKTIYCKNGTDAGSVVVREGGSGGNVIMTIETSAASSAGYTIIPIPGEGVLAKEGALHGTVVNTASVTLFYG*
Ga0114340_100049583	F017801	GGA	LSDLDPIIGTAKAATRNIKSAIESGKEISSAVESIQNFGMAEVKARHAFKAVRKSQVGEITIMTAMAEWRRLDQIRRMELEVKDFLIQQFGQFKGEEEFEKVKKIKEDMIARHAKSKDALGRDVKKLRELQIICVTLAFLVVTIYYIMKGHL*
Ga0114340_100049584	F001433	AGG	MAEKLNANDTLSKVLAYVDSPFKLIALILMAVLAFGGWMLYDNKDLIVGTYKESQKLPEIVEDRVEDAVAHLFKTTGATTVAVFKVNPLLGTRVQYRAYTKEGRDKTNDGLDVGLFTANQSNNQDVVALMAGNVPCGEYKAAQSEIGLWYIEKGMRFGCRISIPPEPSRFIGQITVGWDKPPADLDQTRAMLNIAATMLSRSKK*