Scaffold Ga0114340_1000035

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000035
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108590
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 125 (73.53%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F003688	Metagenome / Metatranscriptome	473	Y
F006385	Metagenome / Metatranscriptome	374	Y
F009530	Metagenome / Metatranscriptome	316	Y
F009885	Metagenome / Metatranscriptome	311	Y
F017301	Metagenome / Metatranscriptome	241	Y
F020171	Metagenome / Metatranscriptome	225	Y
F027847	Metagenome / Metatranscriptome	193	Y
F029106	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_1000035102	F009885	N/A	MTTTDWAQFILALLSIGTVIVGSIRWYIKIQVAPIAEAVEDIRSETKTNGGSSMRDEIKAIKVEQENARDKRKATSDKLDHMYDILLDYIAKSK*
Ga0114340_1000035165	F000264	AGGA	MMAGKLYTNEVWLRKRYLVDKKTPEEIAKESGASIETIYVYLAKFGLRKSRR*
Ga0114340_1000035166	F029106	GAG	MNRMQKLLIGLAVAGAVGITFVATSLRGMPEAFDWEDDEEKNYE*
Ga0114340_100003529	F003688	N/A	MYTDNMRRAFHSIISPKNFQVELIDNEHFLTIKLNEYHFLKMGHNEKIEALQYVVQLKKALEMEGAIVLVSREAIK*
Ga0114340_100003533	F017301	AGGAGG	MNTTQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAALAPVAIRAINPNDKAFGILPDASSVEKALKAAKPPVKKASTVREAAAKKAKSSGGGKNNQVN*
Ga0114340_100003569	F020171	AGGAG	MEQFIDTLAEHITGAIQQEIAEELFDQWSYNNLEEGEDYAENKFMQYASDELKQQYNEYYGYIEGDEFLL*
Ga0114340_100003583	F006385	GGAG	LILDTGTLIAIVIALGGSLTVMCLFWKQNIAQQKEIRRLQILLRTERLK*
Ga0114340_100003595	F027847	AGG	MNPFTALQDFLDENVAYGLIGAFVGVAIAVILCFTLGA*
Ga0114340_100003597	F009530	AGAAG	MEIKYSIWQGSKLISIDNIAHEIKAIDHLIASLNESELGKVKKFSANVMDIKVNK*