Scaffold Ga0105745_1051612

Overview

Basic Information

• Taxon OID: 3300007972
• Scaffold ID: Ga0105745_1051612
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1130
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002598	Metagenome / Metatranscriptome	544	Y
F045755	Metagenome / Metatranscriptome	152	N
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105745_10516123	F002598	AGAAGG	MATKLYTIEALLIGKEYHSRNRHFEGEIVSARPRPEIWYGDKTEAYLIEINTRSLRNKFATVAVKVGE*
Ga0105745_10516124	F101047	GAG	MKELYTQIFECDICLGQGWQFFGNETDYDVEACECNPLGFFQENK*
Ga0105745_10516125	F045755	AGGAG	MSEIAGMWICDNCNTLATVSVAIDTLVIEQCKCVTKNKIK