Scaffold Ga0104988_10784

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10784
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28929
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (72.73%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000601	Metagenome	996	Y
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F008415	Metagenome / Metatranscriptome	333	N
F027426	Metagenome	194	Y
F031850	Metagenome	181	N
F090367	Metagenome / Metatranscriptome	108	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_107842	F000601	N/A	MIIKKLNIEETIKAYTNENGFSWGINTVMKSLAPGASYDLTSAGNFIIDRWDSSLPQPTSQEIRDEYIRQQTIAECIEYFNNKK*
Ga0104988_1078421	F031850	AGTAG	MNRTMHQDDDDYYNANVKAIVFIERDNSITVKFTGFQDKEHSAIFSSWLMMLLNIENAIINDSQSKSIH*
Ga0104988_1078426	F027426	AGGAGG	MFNREDYTALIVTALIILLGYASMHLLVYLDEYFKLTNY*
Ga0104988_1078429	F008415	AGGAGG	MTSIQQLKEHIIRMNDEKLLNQFDLYNSFNLQDSKEVIYYKIIEYELHRRRLLDHKLMEDAYEGIY*
Ga0104988_1078435	F005175	GGA	MIDQELTVEIVCEMYEEKILVLKKEIDRLNEEVQVLNIELMKERSKNLGKI*
Ga0104988_1078436	F105047	GAGG	MRHINYDKVIVEWLDISSDGCDDAWNTEEQLKDLLPATCTTIGYLYEDNPHFIKTFATFSYNSDDSIDFGDCVCIPKGVVVSIKKLEN*
Ga0104988_1078437	F090367	AGG	MKHKLIEWQEKNNLSNKEAVEQLGLKGTNPTVTFLRWKNCQRIPHPRFMKKITKLTGITPNNFYEAWYETHKL*
Ga0104988_1078442	F004111	AGG	MIDKIKQVNDLCAANGAYINQHGKKTVSAWSKIKYFREVFGTEYGINCMMIEHTDRYVLMKCLIMGYDPERIISTGYSKQYRDKPGYIEIAETFAITRALSFMGLMLQDITSKEEYEELDIPVQPMDIKGTTSANSNRYDVDAVQKILKNINYAPHTAKLDFLWRANKDLLEQVKINDLNTYQSIVNKFDSKRDEITTQNEV*