Scaffold Ga0104988_10544

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10544
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17416
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (81.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F014714	Metagenome / Metatranscriptome	260	N
F026822	Metagenome	196	Y
F044438	Metagenome	154	Y
F061542	Metagenome	131	N
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1054416	F044438	AGGCGG	LANTEITYLKKKIAKLETDFASFASLLIQAGLIEVVEEDGQQVFKVNKVKLDG*
Ga0104988_1054419	F061542	AGGA	MICERCKSGGELNKIGQFKRASNMHDKCKGDCGCQHKTGPGVGSRAKVLAEPLRTQFPLE
Ga0104988_1054425	F014714	GGCGG	MTELKEPELFEYLKEFHYSDLEKSEEFDTWDCVSLEHKMFIELKSRKTHYPELLIEEMKYQALVEAAGMRSLSPWYINATPEGIWGFDLGKLPEPAWADKWLPNTTEFANKSNRNKLVGFLKVSNGVKL*
Ga0104988_1054429	F011646	GAGG	VNNVIELRNGALKRIIFYEVADTQDIAIWGGESPQEALKWYRNSPTGSKIYVQEWLTDEEDAKQVSPQIEITPIVLSTIANCMERWSK*
Ga0104988_1054430	F026822	AGCAGG	VSEPAYLFGDDYALRGVEEDIVKCKECGSEFDYAYYRSYTCSECEDLIIKRERASK*
Ga0104988_1054433	F072283	GAG	MNTMQDLIDLIKPILPNALIIDTDEGVLIETGLELDLGGLLQPIEREGASK*