Scaffold Ga0104986_1911

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1911
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 44980
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (48.48%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Associated Families: 20

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F002843	Metagenome / Metatranscriptome	526	Y
F003748	Metagenome / Metatranscriptome	470	Y
F004232	Metagenome / Metatranscriptome	447	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F015354	Metagenome / Metatranscriptome	255	Y
F016253	Metagenome / Metatranscriptome	248	Y
F026825	Metagenome / Metatranscriptome	196	N
F038648	Metagenome / Metatranscriptome	165	N
F066594	Metagenome / Metatranscriptome	126	N
F077447	Metagenome / Metatranscriptome	117	N
F097206	Metagenome	104	Y
F102590	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_191111	F077447	AGGA	VQVEVISDDVEIRIGEMKWVGVAYTRDGKSKVYVRTKAEFKTKFIPVIEQAP*
Ga0104986_191112	F066594	N/A	LNKHPKLYIAAQEQLFAKFQSRSIPIQHWSKYLMTPKELSLLFLKLEESKSVLHQIAITDLGESGELARKQLGIQ*
Ga0104986_191119	F007361	N/A	MNGKLFQICGLPRFGSAFMSVLFSLETDCIGLHEQGATDPNWQKSIEEYRMRYKYVADCSTYGYLPKAVVHDSIKVYVKKDAESSAKECTERFGYEVHLPSIQMLREYADKWAASNSVMTIGEGELFKVDTLRRIWVHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGGRLLKEVF*
Ga0104986_19112	F001259	AGGAGG	MKDSPAFIYVHKNNKAIRVESLDTAKHIDENPEWKHVSTVSAHVVLENILRASIKERNQIIKHLLE*
Ga0104986_191121	F005740	GAG	MKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGEENGACVGKQLVDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGNWIRTQSSGAWIDGEKLTLALPYVQSTKKFISLSGVIREATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCSNDEDKPVTVMAKMRHINATSANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
Ga0104986_191123	F012111	AGG	MPSEVDKNQVAFAVNASFRQSFVSPRPGFIQKDYETCLSITADNTLVTADQTNVTADGYSEECYSSGGLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQSLSATPDLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATVDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNIIDNDQADLLWASSAVVFDNRLLMTSQPRYNAEGVVHKSLVVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKTENAYGDRCFSIARGLDGTIQIWEISKTEKFDNNLADGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWVEWADWSECAATLQCQPACPLTNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE*
Ga0104986_191126	F004664	AGGAG	MSGYKVLNEHMVIPGGWSYRVPETGIEIAGGSWPQLHEFIRNHYTANAIKIPSNLDTLITEYACRNGADCSYDEVEIPKPEGRKSLQLGDVIRFSMSLLHGLTVGGGKVGQAEANRRASICSTCPFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDENLQSCEFCGCFIRSMVWFPIETLHKFSDAIENENLPAHCWKKRPCTET*
Ga0104986_191133	F012040	AGGAG	MQLPEVDILEWTTSGQTAELAIILQNPILRMALRIVAESMPIPMPSNGTKESDIVFAAGVTAGYAHCLENLRKLAVTDTTREPEATFEKQY*
Ga0104986_191136	F015354	N/A	MNSNLSSLIRHFLTAAGGFLVAKGLASADQVAELAGAVVSIAGVGWSVYNNRKTSKAPSDAVKAE*
Ga0104986_191137	F026825	N/A	MTDHHAFIRDISIGVGGPIIGILGNAVLSDPHLKTASLGLGALAALLTCAVKAVELYRKLKNEK*
Ga0104986_191138	F002843	N/A	MIVPVNIVAVQVNQNNSLFVTTGVDYDNDGTVVGSEITAQYTLNPGDSLEGQPVEVVNIANALWTPAIVEAYKLANPVPVVATADSLAEAPVAN*
Ga0104986_191143	F038648	GGAG	MPVFILPKGVEVPENLAEGEAFQTMATILLGKNGKAEVIEIDGIAIPGYEKKSKGKKLADAQEDAAEGGEEAGSMSRGGGKQGFIAEVMQRGAGPMAR*
Ga0104986_191145	F005388	N/A	MACTNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGSNNGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGAGAGAELLKRIGANRVIKNFRHVPNLFPPRYSYAGGKYTLVQPFTSTSGTKGTVFSVNPSWTTALYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLDTDCPDPLDKKGQHYAEFIHAPEPIFTNQGMTIIFRRCTGALTTVICS*
Ga0104986_191153	F102590	GAG	MKPQHTPGPWRQTGPNVRAGDALICYATNHHANAETPESEKLANARLISLAPQMLLALERLAHPMADDEDLDYAREVIAKAKGL*
Ga0104986_191155	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILAGEAAESGATPLSIYDDNKHICSLVAKDGHQILELIIEREDGDKLCPGTPDSETL*
Ga0104986_191157	F001964	GGAGG	VSRNLFRKPVYKVQISGAIGWSDLKERVVKFETVEFASRKDAERAAKELNPGEYTQGRIRVVPVELSEDYDVYPTAERTKANS*
Ga0104986_191162	F003748	N/A	MFAVNRKDAGGRYIDAEGDYTVTVSKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELFITARSEEYQVNGETKKTLRIKNMREVPIASVDADDLDPKPF*
Ga0104986_191164	F016253	GGAGG	MSDRIKSIIDGGTGVYSISKKEAGEIHKAAKKVKNHEVSYWTRNRKNKKESK*
Ga0104986_19117	F004232	GAG	VDALSNIYYPRKPAFTLHKLSVEQIFQSTQMKHTYKPIVAVDPGVGGGFAISTSEGILLFPMPESLPDTAQLLSGFKVNDSHLWIEKVPKFVSKLTSSASMATLHENYGIVQGLGYAQGYALHRVEPKIWQEPLGLGGRKSCETGPEWKRKLKSKAQELYPHLDVTLKNCDALLILHYAMGGGR*
Ga0104986_19118	F097206	AGGAGG	MIHKSNRPPSPEELKQLLIAAFAMGVVVASAYFILFVVK*