Scaffold Ga0104986_1720

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1720
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25799
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (71.11%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F039535	Metagenome / Metatranscriptome	163	Y
F059960	Metagenome / Metatranscriptome	133	Y
F065780	Metagenome / Metatranscriptome	127	Y
F074589	Metagenome / Metatranscriptome	119	N
F081323	Metagenome / Metatranscriptome	114	Y
F082668	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_172012	F039535	GGAG	MRKIFALCVVSLIALAGVADAAEAPKRFERVQMAQHPFDFVPETKRSVPAWAKCPEIWNQLRDAGWLEKDVVRADQIVWRESRCIPTAHNKNDPNTVQGVKGSLGLFQINLFWIQRTAYYPRGYLQTVLNREFAPTDLFDVDISIASAGALIAYDRGLGRCGWSAWLGC*
Ga0104986_172013	F074589	AGGAGG	MTPTQIEGMIDRICGLYPSSPVSLQKAKNAFTQDEFLLYQTVEDARKVITVIMDNHDKFPSLKEVHKAFKLLRKPAIEQTLVVCEICDGNGWDTGRRWNFETKEIICEAFTKQSMGQTYTYVVPCKCREFKAA*
Ga0104986_172026	F082668	N/A	MSDALATIIVALISTIGLIIVGLMQLFKKEAREAAIENRQDHAIVQQQLRMIFKSVNRVDDKLDKHLTDHAEGTNGKPAKRN*
Ga0104986_172027	F035302	N/A	MKRPYTGNKDGLAAGERKGLRVFINELTKLYPAIWNNGSYVNRPMRGKKELSVHATGRAVDLSYRFMAKEKRGIPEGGRKQAMEAMDFLVKNADAFGLEAILDYFPMPHGRGWRCDRSAWTIYNTKTITGAPMGDWFHAEISPAMADNPDAMREAFAQAAKPVA*
Ga0104986_172029	F065780	GAGG	MKKIKNYFVDNTWTWVGTGLVLITLSGTTFRQALLLTGIGIVIHSVLTLGSKE*
Ga0104986_172041	F081323	AGGA	MANYKIISENCTLGAQGSNISSDDLEGLNVAALVDGGHLAEVNVKVSKQEPKESDK*
Ga0104986_172044	F059960	N/A	MSKQIDALLTERAGYERRGLKDRVEAVDAALRELGFDHKYQSEVEIASIEPEVETAVVKRGKKKKV*
Ga0104986_17207	F036680	AGGAGG	MRITNHSLDHIELIASGDTALFEIRLIVAMHDWSDEEADAGFDEIGALGWLMNLLHLAAQGEDIKTGAEEFLKAMMTLDEQRVYLARVERISMNEEETK*