Scaffold Ga0104986_1652

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1652
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21064
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (61.11%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011143	Metagenome / Metatranscriptome	294	Y
F018168	Metagenome	236	Y
F020143	Metagenome	225	N
F024787	Metagenome	204	N
F026555	Metagenome	197	N
F026865	Metagenome / Metatranscriptome	196	N
F027846	Metagenome / Metatranscriptome	193	N
F033425	Metagenome / Metatranscriptome	177	Y
F036148	Metagenome	170	N
F045093	Metagenome	153	N
F081333	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_16521	F033425	GAGG	MAIITSQVTVTGTRQSIISVDNVTRDVLLHAKHEVFIGNSGVTSTNGYIMDNGDVLRLSLVDGEDLWAVTAGGSGTLHVLVSKVD*
Ga0104986_165213	F036148	N/A	MATKKTNKTTKRRRRAPRKADALNKLENHYITLNEMYRAAKAAGFSSEVAFWLITEPGASMPDWVNPTKPHEIIPRIDPTDDEDED*
Ga0104986_165217	F018168	N/A	MKLDKKKKEILKSYLRSVAAATVTTALALVAEWSPEYAILAGAIVAPLARYFDKADDKFGINSK*
Ga0104986_165223	F020143	AGG	MILPDRSLKAIYVENLDVVMDKMKKMDADLQKEFKRELNKAVRPVAKLAQSFVPHSPFPGWRDVEPSYPPAWGWAYDNVHRGRTIGENKRSRWKWSQSEVVAGIKLSSAKTKVQRVKGTTFSVTALAVINKSVPGIIYELAGFGTSKSRSRTRRVSRNKNASESFIRKLDGTASSSAYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGKEFRG*
Ga0104986_165224	F026865	N/A	VSVATGISPKDLLEVDPAIYAAIKAILQEKYYNNKKATVRRK*
Ga0104986_165225	F011143	AGGTGG	MHKIEIVKKDGKKLTYDLTPSVKVAFEAEFKTGWRKRLSDLQMESDLWWFAWKLEKDAGKTELAFGDEYINQYSDVDLVYDSKNG*
Ga0104986_165233	F081333	AGGAG	MKYLPSALQITGSLFIVAGVATFNPVVAVILAGAFLVLFGVALENRGK*
Ga0104986_165235	F045093	AGG	VQVATIQGVLNMETQNARPLKIVGNGKPKKKLGRHTSAMVKSLTGRTDIDGVKREMLLGLARAWDRIEESGKGGHTIPSISKELREIWDSCSLPEEDDLFE*
Ga0104986_16525	F026555	N/A	MLMVSADAPDVDASTTLSTGFMSKFDYHKAMREGHGYNLYVADLLATFGIPKIDVPEFTIATTHDEIKDKTFNEKDIVVDDLILEVKSSSRSFTDIDDFPHNPLIVDTVYGFDSKIIKPFAYVIISQKTLNIFVIPVATKYDWGIQEYYDAQRDITQRFYMVRKRHCRPFIELVDILLERAHERTNQMQ*
Ga0104986_16527	F024787	AGGA	MNYEIFGWLMVISLFTLVALLIVATWIVAVENGYDKGFKNGYKRGTTDTKQTNVKVEKFTVRSHPSMRQKMLEADNEYLMEKVVSLWDKENR*
Ga0104986_16528	F027846	AGG	LELVKYDKQSGAYVDEKRKHFVKASLIRQHAKKSIGARQIRGRLSAKMVEAYWLDKFKEVVKYEL*