Scaffold Ga0105537_100001

Overview

Basic Information

• Taxon OID: 3300007659
• Scaffold ID: Ga0105537_100001
• Source Dataset Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 160158126 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 173949
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (33.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F098763	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105537_100001124	F053092	N/A	MQSDQGLILCLTHTLLVLGALILEPAEMEDTMDDHTVQLFGILVAKELGIATHRIKADKHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0105537_10000168	F047508	GGAG	MLGHRLVEGRIKYPYLRSIWEYLRHSFDTEDVGRVVKRSELCALMEHIYYLRGDTYALSKALCTMYEAMSNGVDLIEGLYEVLFFENVKDNLYAACVVRNVKVALDLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKVLYYMVRCELILSSP*
Ga0105537_10000179	F098763	N/A	MDRRASLRVLSTALHLAPKLFEAVIWATIADDSSDEVEGKGRMNTIPTAVDEQTLGVL*