NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099847_1000736

Scaffold Ga0099847_1000736


Overview

Basic Information
Taxon OID3300007540 Open in IMG/M
Scaffold IDGa0099847_1000736 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11131
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028771Metagenome / Metatranscriptome190N
F062669Metagenome / Metatranscriptome130N
F073566Metagenome / Metatranscriptome120N
F090234Metagenome / Metatranscriptome108N
F104955Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0099847_100073614F090234N/AMEVFDQELNNHLEETSDCMECGVEIQLGKRYCCFSCFDSSNR*
Ga0099847_100073618F073566N/AMNYSKSINTLRDRTVDLLLEFTDNKSVSNYLRDIDRELERLDSAIGREPKVGWVSIDNMMWEMVKEDSSLTRVSVEFKIRQEKDYLHMNRRSIKINLVD*
Ga0099847_10007366F062669N/AMARKKLIKYYDTDNEAQSYSFKKGYVIYPEPMNVDSFKGEWRVSIELGHRKHTYPEILSLTEAYSKIWNEYKKIQNRDKNDKN*
Ga0099847_10007367F104955GGAGMPFNKEISDHFYELGLDLLFLGYTKEDIELWIRSAEEEDSFEECDGLQRALNKSNDIVYGEEEVN*
Ga0099847_10007369F028771N/AMSFLKGNIGESLWLSEISKTHTDIEKAPNKKFYDWDVKAKYNGREVTYEVKYDAKGYYYADRYNRPVNIYIEFLNTKKGENSGILASKATYYVYILKSLDDVETAYVFDRLELLEYLRNADIKVKGNSFGGDNNAKGWIPPLNSLKHLILKKVLFI*
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