NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104955

Metagenome / Metatranscriptome Family F104955

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104955
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 69 residues
Representative Sequence MPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Number of Associated Samples 81
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 77.00 %
% of genes near scaffold ends (potentially truncated) 31.00 %
% of genes from short scaffolds (< 2000 bps) 79.00 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (59.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(22.000 % of family members)
Environment Ontology (ENVO) Unclassified
(51.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(84.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 65.28%    β-sheet: 0.00%    Coil/Unstructured: 34.72%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF12684DUF3799 44.00
PF04466Terminase_3 8.00
PF04542Sigma70_r2 4.00
PF05866RusA 1.00
PF04404ERF 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 8.00
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 4.00
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 4.00
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 4.00
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 4.00
COG4570Holliday junction resolvase RusA (prophage-encoded endonuclease)Replication, recombination and repair [L] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A59.00 %
All OrganismsrootAll Organisms41.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10009910Not Available6192Open in IMG/M
3300000101|DelMOSum2010_c10030729All Organisms → Viruses → Predicted Viral2958Open in IMG/M
3300000101|DelMOSum2010_c10214227Not Available634Open in IMG/M
3300000121|TDF_OR_ARG04_113mDRAFT_c1015419Not Available918Open in IMG/M
3300001344|JGI20152J14361_10065840Not Available853Open in IMG/M
3300001351|JGI20153J14318_10055961Not Available1381Open in IMG/M
3300003580|JGI26260J51721_1012866All Organisms → Viruses → Predicted Viral2061Open in IMG/M
3300004448|Ga0065861_1029371All Organisms → Viruses → Predicted Viral3304Open in IMG/M
3300004448|Ga0065861_1156954Not Available721Open in IMG/M
3300004457|Ga0066224_1041310All Organisms → Viruses → Predicted Viral4182Open in IMG/M
3300004460|Ga0066222_1025565Not Available1013Open in IMG/M
3300004460|Ga0066222_1291609All Organisms → Viruses → Predicted Viral1286Open in IMG/M
3300005609|Ga0070724_10139833Not Available1047Open in IMG/M
3300005609|Ga0070724_10571441Not Available508Open in IMG/M
3300005612|Ga0070723_10492571Not Available604Open in IMG/M
3300005837|Ga0078893_14527865All Organisms → Viruses → Predicted Viral3738Open in IMG/M
3300005920|Ga0070725_10113270All Organisms → Viruses → Predicted Viral1170Open in IMG/M
3300005920|Ga0070725_10444003Not Available580Open in IMG/M
3300006752|Ga0098048_1065933All Organisms → Viruses → Predicted Viral1121Open in IMG/M
3300006752|Ga0098048_1205103Not Available581Open in IMG/M
3300006752|Ga0098048_1214555Not Available566Open in IMG/M
3300006789|Ga0098054_1021364All Organisms → Viruses → Predicted Viral2574Open in IMG/M
3300006789|Ga0098054_1057281All Organisms → Viruses → Predicted Viral1485Open in IMG/M
3300006990|Ga0098046_1126963Not Available555Open in IMG/M
3300007280|Ga0101452_127501All Organisms → Viruses → Predicted Viral2162Open in IMG/M
3300007540|Ga0099847_1000736Not Available11131Open in IMG/M
3300009058|Ga0102854_1095754Not Available849Open in IMG/M
3300009076|Ga0115550_1291001Not Available526Open in IMG/M
3300009079|Ga0102814_10546873Not Available632Open in IMG/M
3300009428|Ga0114915_1051182Not Available1330Open in IMG/M
3300009428|Ga0114915_1051708Not Available1322Open in IMG/M
3300009505|Ga0115564_10036517All Organisms → Viruses → Predicted Viral3066Open in IMG/M
3300010150|Ga0098056_1031857All Organisms → Viruses → Predicted Viral1853Open in IMG/M
3300010392|Ga0118731_103334145Not Available5962Open in IMG/M
3300010883|Ga0133547_10800171All Organisms → Viruses → Predicted Viral1851Open in IMG/M
3300011254|Ga0151675_1004905All Organisms → Viruses → Predicted Viral3442Open in IMG/M
3300017724|Ga0181388_1012975All Organisms → Viruses → Predicted Viral2135Open in IMG/M
3300017752|Ga0181400_1170157Not Available612Open in IMG/M
3300020165|Ga0206125_10007971Not Available8102Open in IMG/M
3300020165|Ga0206125_10106998All Organisms → Viruses → Predicted Viral1175Open in IMG/M
3300020165|Ga0206125_10144559Not Available961Open in IMG/M
3300020165|Ga0206125_10246386Not Available681Open in IMG/M
3300020169|Ga0206127_1076588Not Available1519Open in IMG/M
3300020169|Ga0206127_1211567Not Available695Open in IMG/M
3300020175|Ga0206124_10054437All Organisms → Viruses → Predicted Viral1747Open in IMG/M
3300020175|Ga0206124_10293383Not Available621Open in IMG/M
3300020185|Ga0206131_10026055All Organisms → Viruses → Predicted Viral4583Open in IMG/M
3300020187|Ga0206130_10094004All Organisms → Viruses → Predicted Viral1797Open in IMG/M
3300020187|Ga0206130_10100208All Organisms → Viruses → Predicted Viral1704Open in IMG/M
3300020335|Ga0211690_1035527Not Available1194Open in IMG/M
3300021169|Ga0206687_1300232Not Available556Open in IMG/M
3300021371|Ga0213863_10229362Not Available804Open in IMG/M
3300021957|Ga0222717_10121050All Organisms → Viruses → Predicted Viral1619Open in IMG/M
3300021957|Ga0222717_10249450All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300021957|Ga0222717_10731554Not Available502Open in IMG/M
3300021959|Ga0222716_10149416All Organisms → Viruses → Predicted Viral1526Open in IMG/M
(restricted) 3300022938|Ga0233409_10040760All Organisms → Viruses → Predicted Viral1325Open in IMG/M
(restricted) 3300024059|Ga0255040_10051235All Organisms → Viruses → Predicted Viral1524Open in IMG/M
3300024180|Ga0228668_1032457All Organisms → Viruses → Predicted Viral1105Open in IMG/M
3300024180|Ga0228668_1096854Not Available526Open in IMG/M
3300024192|Ga0228637_1110714Not Available543Open in IMG/M
3300024221|Ga0228666_1059346Not Available771Open in IMG/M
3300024226|Ga0228667_1098391Not Available547Open in IMG/M
3300024229|Ga0233402_1026985All Organisms → Viruses → Predicted Viral1247Open in IMG/M
3300024236|Ga0228655_1018327All Organisms → Viruses → Predicted Viral1765Open in IMG/M
3300024242|Ga0228673_1013388All Organisms → Viruses → Predicted Viral1486Open in IMG/M
3300024248|Ga0228676_1133403Not Available528Open in IMG/M
3300024292|Ga0228630_1102423Not Available582Open in IMG/M
3300024294|Ga0228664_1031053All Organisms → Viruses → Predicted Viral1421Open in IMG/M
3300024296|Ga0228629_1125492Not Available677Open in IMG/M
3300024321|Ga0228626_1122476Not Available545Open in IMG/M
3300024413|Ga0233393_1062097Not Available863Open in IMG/M
3300024420|Ga0228632_1148703Not Available544Open in IMG/M
3300025070|Ga0208667_1005380All Organisms → Viruses → Predicted Viral3462Open in IMG/M
3300025084|Ga0208298_1008669All Organisms → Viruses → Predicted Viral2610Open in IMG/M
3300025085|Ga0208792_1003132All Organisms → Viruses → Predicted Viral4601Open in IMG/M
3300025276|Ga0208814_1036897All Organisms → Viruses → Predicted Viral1507Open in IMG/M
3300025483|Ga0209557_1008846All Organisms → Viruses → Predicted Viral3979Open in IMG/M
3300025543|Ga0208303_1021086Not Available1848Open in IMG/M
3300025594|Ga0209094_1058545Not Available972Open in IMG/M
3300025621|Ga0209504_1161459Not Available525Open in IMG/M
3300025626|Ga0209716_1038925All Organisms → Viruses → Predicted Viral1670Open in IMG/M
3300025849|Ga0209603_1011291Not Available6299Open in IMG/M
3300025874|Ga0209533_1183481Not Available900Open in IMG/M
3300026453|Ga0228644_1016111All Organisms → Viruses → Predicted Viral1585Open in IMG/M
3300026460|Ga0247604_1060422Not Available903Open in IMG/M
3300026483|Ga0228620_1064012Not Available805Open in IMG/M
3300027753|Ga0208305_10275558Not Available593Open in IMG/M
3300027845|Ga0209271_10253901Not Available708Open in IMG/M
(restricted) 3300027861|Ga0233415_10133013All Organisms → Viruses → Predicted Viral1118Open in IMG/M
3300027967|Ga0209272_10288016Not Available562Open in IMG/M
3300028125|Ga0256368_1065336Not Available628Open in IMG/M
3300028129|Ga0228634_1020257All Organisms → Viruses → Predicted Viral2026Open in IMG/M
3300028134|Ga0256411_1199077Not Available635Open in IMG/M
3300028391|Ga0233394_1110297Not Available561Open in IMG/M
3300029302|Ga0135227_1017603Not Available682Open in IMG/M
3300029308|Ga0135226_1031330Not Available547Open in IMG/M
3300031602|Ga0307993_1046419All Organisms → Viruses → Predicted Viral1090Open in IMG/M
3300031645|Ga0307990_1212988Not Available747Open in IMG/M
3300032277|Ga0316202_10450987Not Available603Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater22.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine11.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater11.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment7.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine5.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean3.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous2.00%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water2.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.00%
Marine HarborEnvironmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor2.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.00%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000121Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3mEnvironmentalOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300001351Pelagic Microbial community sample from North Sea - COGITO 998_met_03EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005609Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300005920Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007280Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ18 time pointEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300011254Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02EnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020169Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300020335Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)EnvironmentalOpen in IMG/M
3300021169Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022938 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024192Seawater microbial communities from Monterey Bay, California, United States - 47DEnvironmentalOpen in IMG/M
3300024221Seawater microbial communities from Monterey Bay, California, United States - 80DEnvironmentalOpen in IMG/M
3300024226Seawater microbial communities from Monterey Bay, California, United States - 81DEnvironmentalOpen in IMG/M
3300024229Seawater microbial communities from Monterey Bay, California, United States - 54DEnvironmentalOpen in IMG/M
3300024236Seawater microbial communities from Monterey Bay, California, United States - 67DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024248Seawater microbial communities from Monterey Bay, California, United States - 48D_rEnvironmentalOpen in IMG/M
3300024292Seawater microbial communities from Monterey Bay, California, United States - 37DEnvironmentalOpen in IMG/M
3300024294Seawater microbial communities from Monterey Bay, California, United States - 78DEnvironmentalOpen in IMG/M
3300024296Seawater microbial communities from Monterey Bay, California, United States - 36DEnvironmentalOpen in IMG/M
3300024321Seawater microbial communities from Monterey Bay, California, United States - 31DEnvironmentalOpen in IMG/M
3300024413Seawater microbial communities from Monterey Bay, California, United States - 21DEnvironmentalOpen in IMG/M
3300024420Seawater microbial communities from Monterey Bay, California, United States - 40DEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025594Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)EnvironmentalOpen in IMG/M
3300025621Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300026453Seawater microbial communities from Monterey Bay, California, United States - 56DEnvironmentalOpen in IMG/M
3300026460Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026483Seawater microbial communities from Monterey Bay, California, United States - 23DEnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027845Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027967Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300028129Seawater microbial communities from Monterey Bay, California, United States - 42DEnvironmentalOpen in IMG/M
3300028134Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_12 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028391Seawater microbial communities from Monterey Bay, California, United States - 24DEnvironmentalOpen in IMG/M
3300029302Marine harbor viral communities from the Indian Ocean - SRB3EnvironmentalOpen in IMG/M
3300029308Marine harbor viral communities from the Indian Ocean - SRB2EnvironmentalOpen in IMG/M
3300031602Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260EnvironmentalOpen in IMG/M
3300031645Marine microbial communities from Ellis Fjord, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1000991023300000101MarineMGFDRDVSDHFYELGLDLLFLGYTREDLEIWITKAEEEDAFEECDGLLRALKYEAIAKELGYDYDYGEEEEDFI*
DelMOSum2010_1003072923300000101MarineMPFNKDVSDHFYELGLDLLFLGYTRKDVEIWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI*
DelMOSum2010_1021422713300000101MarineMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI*
TDF_OR_ARG04_113mDRAFT_101541933300000121MarineMSFNKDVSDHFYELGLDLLFLGYSRKDVEIWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI*
JGI20152J14361_1006584023300001344Pelagic MarineMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI*
JGI20153J14318_1005596123300001351Pelagic MarineMPFNKDVSDHFXXLGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI*
JGI26260J51721_101286633300003580MarineMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI*
Ga0065861_102937153300004448MarineMPFNKDVSDHFYELGLDLLFLGYSREDVELWIEQAEEDECYEECDGLLRALNYKGNVDDDYYYGEEEEDFI*
Ga0065861_115695433300004448MarineDLLYLGYTREDLEIWISKAEEEDAFEECDGLLRALKFEAIAKELGYDYDYGEEEEDFI*
Ga0066224_104131033300004457MarineMPFNKDVSDHFYELGLDLLFLGYSREHVELWIEQAEEDECYEECDGLLRALNYKGNVDDDYYYGEEEEDFI*
Ga0066222_102556513300004460MarineMPFNKDVSDHFYELGLDLLFLGYSRKDVELWIEQAEEDECYEECDGLLRALNYKGNVDDDYYYGEEEEDFI*
Ga0066222_129160933300004460MarineMGFDRDVSDHFYELGLDLLFLGYTREDLEIWISKAEEEDAFEECDGLLRALKFEAIAKELGYDYDYGEEEEDFI*
Ga0070724_1013983313300005609Marine SedimentKVSDHFYELGLDLLYLGYTREDLEIWISKAEEEDAFEECDGLLRALKFESIAKELGYDYDYGEEEEDFI*
Ga0070724_1057144113300005609Marine SedimentMPFNKDVSDHFYELGLDLLFLGYTRKDVEIWIEKAEEDECYEECDGVLRALNYKGDVVDDYYYGEEEEDFI*
Ga0070723_1049257113300005612Marine SedimentTIYNNIHFTENCSMPFNKDVSDHFYELGLDLLFLGYTRKDVEIWIEKAEEDECYEECDGLLRALNYKGDVDDDYYYGEEEEDFI*
Ga0078893_1452786533300005837Marine Surface WaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEXXXXXXXXXXXDYYYGEEEEDFI*
Ga0070725_1011327033300005920Marine SedimentMPFNKDVSDHFYELGLDLLFLGYTRKDVEIWIEKAEEDECYEECDGLLRALNYKGDVDDDYYYGEEEEDFI*
Ga0070725_1044400323300005920Marine SedimentMGFDKKVSDHFYELGLDLLYLGYTREDLEIWISKAEEEDAFEECDGLLRALKFEAIAKELGYDYDYGEEEEDFI*
Ga0098048_106593323300006752MarineMPFKKEVSDHFYELGLDLLFIGYTREDLVLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI*
Ga0098048_120510323300006752MarineMPFNKDVSDHFYELGLDLLFLGYSRKDVEMWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI*
Ga0098048_121455523300006752MarineMPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDFI*
Ga0098054_102136423300006789MarineMPFKKEVSDHFYELGLDLLFIGYTREDLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI*
Ga0098054_105728133300006789MarineMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKQAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI*
Ga0098046_112696323300006990MarineMPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEECDGLLRALKYKSNAEDDYYYGEEEEDFI*
Ga0101452_12750133300007280Marine Surface WaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEECDGLLRALNYKSNVEDDYYYGEEEEDFI*
Ga0099847_100073673300007540AqueousMPFNKEISDHFYELGLDLLFLGYTKEDIELWIRSAEEEDSFEECDGLQRALNKSNDIVYGEEEVN*
Ga0102854_109575433300009058EstuarineCSMPFNKDVSDHFYELGLDLLFLGYTRKDVEIWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI*
Ga0115550_129100123300009076Pelagic MarineMPFNKDVSDHFYELGLDLLFIGYTRAELRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI*
Ga0102814_1054687313300009079EstuarineDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI*
Ga0114915_105118223300009428Deep OceanMPFNKDISDHYYELGLDLLFLGYTREDIEIWIREAEQKDSFEECDGLQKALNYSDNIDYGEEEDI*
Ga0114915_105170813300009428Deep OceanMPFNKDISDHYYELGLDLLFLGYTREDIEIWIREAEQEDSFEECDGLQKALNHSNDIDYGEEEDI*
Ga0115564_1003651723300009505Pelagic MarineMPFNKDVSDHFYELGLDLLFLGYSREDVELWIEQAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI*
Ga0098056_103185753300010150MarineMPFNKDVSDHFYELGLDLLFLGYSRKDVEMWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEDFI*
Ga0118731_10333414573300010392MarineMGFDKKVSDHFYELGLDLLYLGYTREDLEIWISKAEEEDAFEECDGLLRALKFESIAKELGYDYDYGEEEEDFI*
Ga0133547_1080017153300010883MarineMGFDRDVSDHFYELGLDLLYLGYTREDLEIWISKAEEEDAFEECDGLLRALKFEAIAKELGYDYDYGEEEEDFI*
Ga0151675_100490533300011254MarineMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEQAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI*
Ga0181388_101297533300017724SeawaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEDFI
Ga0181400_117015713300017752SeawaterNSIHFTENCSMPFNKDVSDHFYELGLDLLFIGYTKKDIKLWIEQAEEDECYEECDGLLRALNFKGSMEEIRHRDGEEEEDFI
Ga0206125_1000797153300020165SeawaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0206125_1010699823300020165SeawaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIEQAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI
Ga0206125_1014455913300020165SeawaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEE
Ga0206125_1024638633300020165SeawaterMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEQAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI
Ga0206127_107658823300020169SeawaterMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI
Ga0206127_121156713300020169SeawaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSME
Ga0206124_1005443733300020175SeawaterMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEKEDFI
Ga0206124_1029338323300020175SeawaterMPFDKNVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0206131_1002605553300020185SeawaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSIEEMGYNYGEEEEDFI
Ga0206130_1009400433300020187SeawaterMPFNKDVSDHFYELGLDLLFIGYTRADLMLWIKKAEEDECYEECDGLLRALNFKGSIEEMGYNYGEEEEDFI
Ga0206130_1010020833300020187SeawaterMPFDKNVSDHFYELGLDLLFIGYTRADLKLWIKKAEEEESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0211690_103552733300020335MarineMPFNKDISDHYYELGLDLLFLGYTREDIEIWIREAEQEDSFEECDGLQKALNHSNDIDYGEEEDI
Ga0206687_130023213300021169SeawaterSIHFTENCSMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0213863_1022936223300021371SeawaterMPFNKDVSDHFYELGLDLLFLGYTKKDIRLWIEQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDFI
Ga0222717_1012105023300021957Estuarine WaterMPFDKKVSDHFYELGLDLLFIGYTREDLKLWIKEAEEDDSYEECDGLLRALNFKGNMEEMGYNYGEEEEDFI
Ga0222717_1024945023300021957Estuarine WaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0222717_1073155423300021957Estuarine WaterIHFTENCSMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0222716_1014941653300021959Estuarine WaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEDFI
(restricted) Ga0233409_1004076013300022938SeawaterGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGIMEEMGYNYGEEEEDFI
(restricted) Ga0255040_1005123523300024059SeawaterMPFNKDVSDHFYELGLDLLFLGYTKKDIKLWIEQAEEDECYEECDGLLRALNFKGSMEEIRHRDGEEEEDFI
Ga0228668_103245713300024180SeawaterNNIHFTENCSMPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDFI
Ga0228668_109685423300024180SeawaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIEQAEEDECYEECDGLLRALNYKGNVDDDYYYGEEEEDFI
Ga0228637_111071433300024192SeawaterGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0228666_105934623300024221SeawaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDFI
Ga0228667_109839113300024226SeawaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEECDGLLRALNYKSNAEDDYYYGE
Ga0233402_102698513300024229SeawaterYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDF
Ga0228655_101832733300024236SeawaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKQAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0228673_101338853300024242SeawaterPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0228676_113340333300024248SeawaterDVSDHFYELGLDLLFLGYSREDVELWIEQAEEDECYEECDGLLRALNYKGNVDDDYYYGEEEDFI
Ga0228630_110242313300024292SeawaterMPFNKDVSDHFYELGLDLLFIGYTREDLKLWIKEAEEDDSYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0228664_103105353300024294SeawaterMPFDKKVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0228629_112549233300024296SeawaterFYELGLDLLFLGYSREDVELWIEQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDF
Ga0228626_112247613300024321SeawaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIEQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEED
Ga0233393_106209733300024413SeawaterLGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0228632_114870333300024420SeawaterLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0208667_100538053300025070MarineMPFKKEVSDHFYELGLDLLFIGYTREDLVLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0208298_100866933300025084MarineMPFKKEVSDHFYELGLDLLFIGYTREDLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0208792_100313273300025085MarineMPFNKDVSDHFYELGLDLLFIGYTREDLVLWIKQAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0208814_103689733300025276Deep OceanMPFNKDISDHYYELGLDLLFLGYTREDIEIWIREAEQKDSFEECDGLQKALNYSDNIDYGEEEDI
Ga0209557_100884613300025483MarineGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0208303_102108633300025543AqueousMPFNKEISDHFYELGLDLLFLGYTKEDIELWIRSAEEEDSFEECDGLQRALNKSNDIVYGEEEVN
Ga0209094_105854513300025594Pelagic MarineMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEE
Ga0209504_116145923300025621Pelagic MarineMPFNKDVSDHFYELGLDLLFIGYTRAELRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0209716_103892513300025626Pelagic MarineSMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEGFI
Ga0209603_101129133300025849Pelagic MarineMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEGFI
Ga0209533_118348113300025874Pelagic MarineHFYELGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI
Ga0228644_101611133300026453SeawaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIEQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDFI
Ga0247604_106042213300026460SeawaterMPFNKDVSDHFYELGLDLLFLGYSREDVELWIEQAEEDESYEECDGLLRALNYKSNAEDDYYYG
Ga0228620_106401233300026483SeawaterDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0208305_1027555813300027753EstuarineDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0209271_1025390123300027845Marine SedimentMPFNKDVSDHFYELGLDLLFLGYTRKDVEIWIEKAEEDECYEECDGLLRALNYKGDVDDDYYYGEEEEDFI
(restricted) Ga0233415_1013301333300027861SeawaterMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDESYEECDGLLRALNFKGSMEEM
Ga0209272_1028801623300027967Marine SedimentMGFDKKVSDHFYELGLDLLYLGYTREDLEIWISKAEEEDAFEECDGLLRALKFEAIAKELGYDYDYGEEEEDFI
Ga0256368_106533623300028125Sea-Ice BrineMGFDRDVSDHFYELGLDLLFLGYTREDLEIWISKAEEEDAFEECDGLLRALKYEAIAKELGYDYDYGEEEEDFI
Ga0228634_102025763300028129SeawaterMPFNKDVSDHFYELGLDLLFLGYSRKDVEMWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEDFI
Ga0256411_119907713300028134SeawaterDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDFI
Ga0233394_111029713300028391SeawaterMPFDKKVSDHFYELGLDLLFIGYTREDLKLWIKEAEEDDSYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0135227_101760323300029302Marine HarborMPFNKDVSDHFYELGLDLLFLGYTKKDIELWIEQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDFI
Ga0135226_103133023300029308Marine HarborMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKKAEEDECYEECDGLLRALNFKGGMEEMGYNYGEEEEDFI
Ga0307993_104641923300031602MarineMGFDRDVSDHFYELGLDLLFLGYTREDLEIWITKAEEEDAFEECDGLLRALKYEAISKELGYDYDYGEEEEDFI
Ga0307990_121298833300031645MarineMPFNKEVSDHFYELGLDLLFLGYTREDLEIWITKAEEEDAFEECDGLLRALKYEDVAKELGYDYDYGEEEEDFI
Ga0316202_1045098723300032277Microbial MatMPFNKDVSDHFYELGLDLLFLGYSRKDVELWIEQAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI


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