NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090234

Metagenome / Metatranscriptome Family F090234

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090234
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 44 residues
Representative Sequence MEAFDEELNNYYESLEDSSECMECGVEVQLGKQYCCFSCLDASNR
Number of Associated Samples 80
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 53.70 %
% of genes from short scaffolds (< 2000 bps) 73.15 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (40.741 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(22.222 % of family members)
Environment Ontology (ENVO) Unclassified
(61.111 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(94.444 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 26.67%    β-sheet: 24.44%    Coil/Unstructured: 48.89%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF13481AAA_25 22.22
PF11753DUF3310 13.89
PF04404ERF 9.26
PF05065Phage_capsid 5.56
PF12684DUF3799 2.78
PF05135Phage_connect_1 2.78
PF01510Amidase_2 2.78
PF04883HK97-gp10_like 1.85
PF05521Phage_H_T_join 1.85
PF04542Sigma70_r2 1.85
PF13662Toprim_4 0.93
PF01555N6_N4_Mtase 0.93
PF02195ParBc 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG4653Predicted phage phi-C31 gp36 major capsid-like proteinMobilome: prophages, transposons [X] 5.56
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 1.85
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 1.85
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 1.85
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 1.85
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.93
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.93
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.93

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms59.26 %
UnclassifiedrootN/A40.74 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10020747All Organisms → cellular organisms → Bacteria3840Open in IMG/M
3300000101|DelMOSum2010_c10260610Not Available539Open in IMG/M
3300000929|NpDRAFT_10145068Not Available728Open in IMG/M
3300001344|JGI20152J14361_10022190All Organisms → Viruses2289Open in IMG/M
3300001344|JGI20152J14361_10034445All Organisms → Viruses → Predicted Viral1581Open in IMG/M
3300001344|JGI20152J14361_10041101All Organisms → Viruses → Predicted Viral1343Open in IMG/M
3300001344|JGI20152J14361_10060327Not Available928Open in IMG/M
3300001348|JGI20154J14316_10042005All Organisms → Viruses → Predicted Viral2066Open in IMG/M
3300001351|JGI20153J14318_10061121Not Available1272Open in IMG/M
3300001351|JGI20153J14318_10075457Not Available1049Open in IMG/M
3300001351|JGI20153J14318_10093939Not Available853Open in IMG/M
3300001351|JGI20153J14318_10131912All Organisms → Viruses630Open in IMG/M
3300003580|JGI26260J51721_1011493Not Available2258Open in IMG/M
3300003580|JGI26260J51721_1013795All Organisms → Viruses → Predicted Viral1951Open in IMG/M
3300003580|JGI26260J51721_1046047All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.700Open in IMG/M
3300004097|Ga0055584_100484333All Organisms → Viruses → Predicted Viral1286Open in IMG/M
3300004460|Ga0066222_1203989Not Available530Open in IMG/M
3300005239|Ga0073579_1171200Not Available29373Open in IMG/M
3300005837|Ga0078893_14527525All Organisms → Viruses → Predicted Viral1476Open in IMG/M
3300006025|Ga0075474_10148109All Organisms → Viruses738Open in IMG/M
3300006029|Ga0075466_1008491All Organisms → Viruses → Predicted Viral3557Open in IMG/M
3300006754|Ga0098044_1018940All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium stylosanthis3115Open in IMG/M
3300006793|Ga0098055_1353217All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.546Open in IMG/M
3300006803|Ga0075467_10006205Not Available8508Open in IMG/M
3300006810|Ga0070754_10040754Not Available2519Open in IMG/M
3300006810|Ga0070754_10200278Not Available930Open in IMG/M
3300006874|Ga0075475_10010891Not Available4594Open in IMG/M
3300006874|Ga0075475_10375201All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Aequorivita → unclassified Aequorivita → Aequorivita sp.575Open in IMG/M
3300007229|Ga0075468_10003162All Organisms → Viruses7021Open in IMG/M
3300007344|Ga0070745_1075618Not Available1344Open in IMG/M
3300007344|Ga0070745_1109233Not Available1075Open in IMG/M
3300007344|Ga0070745_1186512Not Available772Open in IMG/M
3300007540|Ga0099847_1000736Not Available11131Open in IMG/M
3300009074|Ga0115549_1273665All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.534Open in IMG/M
3300009074|Ga0115549_1301822Not Available505Open in IMG/M
3300009076|Ga0115550_1223600All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.625Open in IMG/M
3300009086|Ga0102812_10175706All Organisms → Viruses → Predicted Viral1169Open in IMG/M
3300009423|Ga0115548_1075309All Organisms → Viruses → Predicted Viral1139Open in IMG/M
3300009434|Ga0115562_1009945Not Available5517Open in IMG/M
3300009438|Ga0115559_1360147All Organisms → Viruses506Open in IMG/M
3300011253|Ga0151671_1145799All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.546Open in IMG/M
3300017749|Ga0181392_1155918All Organisms → Viruses667Open in IMG/M
3300017772|Ga0181430_1105877Not Available835Open in IMG/M
3300020165|Ga0206125_10015557All Organisms → Viruses4879Open in IMG/M
3300020165|Ga0206125_10050111Not Available2034Open in IMG/M
3300020165|Ga0206125_10132971All Organisms → Viruses → Predicted Viral1016Open in IMG/M
3300020166|Ga0206128_1032818All Organisms → Viruses → Predicted Viral2729Open in IMG/M
3300020166|Ga0206128_1185376Not Available809Open in IMG/M
3300020166|Ga0206128_1357841All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.502Open in IMG/M
3300020175|Ga0206124_10187262All Organisms → Viruses821Open in IMG/M
3300020175|Ga0206124_10315875All Organisms → Viruses593Open in IMG/M
3300020182|Ga0206129_10021835Not Available4930Open in IMG/M
3300021085|Ga0206677_10042897Not Available2413Open in IMG/M
3300021371|Ga0213863_10003390Not Available11006Open in IMG/M
3300021957|Ga0222717_10157167All Organisms → Viruses → Predicted Viral1379Open in IMG/M
3300021957|Ga0222717_10160873All Organisms → Viruses → Predicted Viral1359Open in IMG/M
3300021957|Ga0222717_10571708All Organisms → Viruses597Open in IMG/M
3300021958|Ga0222718_10002279Not Available17402Open in IMG/M
3300021959|Ga0222716_10466782All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.717Open in IMG/M
3300022072|Ga0196889_1041084Not Available915Open in IMG/M
3300022167|Ga0212020_1060709Not Available640Open in IMG/M
3300022178|Ga0196887_1000487Not Available19248Open in IMG/M
3300022218|Ga0224502_10449121All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.502Open in IMG/M
(restricted) 3300023210|Ga0233412_10062999All Organisms → Viruses → Predicted Viral1521Open in IMG/M
(restricted) 3300023210|Ga0233412_10247068All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Cbastvirus → Cellulophaga virus ST781Open in IMG/M
3300023698|Ga0228682_1009283All Organisms → Viruses → Predicted Viral1263Open in IMG/M
3300024185|Ga0228669_1081478All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.620Open in IMG/M
3300024191|Ga0228636_1003163All Organisms → Viruses → Predicted Viral4097Open in IMG/M
3300024191|Ga0228636_1067901Not Available832Open in IMG/M
3300024221|Ga0228666_1031298All Organisms → Viruses → Predicted Viral1194Open in IMG/M
3300024226|Ga0228667_1012499All Organisms → Viruses → Predicted Viral1784Open in IMG/M
3300024226|Ga0228667_1046324Not Available844Open in IMG/M
3300024294|Ga0228664_1024687All Organisms → Viruses → Predicted Viral1679Open in IMG/M
3300024314|Ga0228657_1058699All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.816Open in IMG/M
3300024319|Ga0228670_1015258All Organisms → Viruses → Predicted Viral2064Open in IMG/M
3300024319|Ga0228670_1057419Not Available861Open in IMG/M
3300024328|Ga0228635_1003879All Organisms → Viruses6181Open in IMG/M
3300024359|Ga0228628_1037267All Organisms → Viruses → Predicted Viral1095Open in IMG/M
3300025483|Ga0209557_1025098All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Cbastvirus → Cellulophaga virus ST1829Open in IMG/M
3300025543|Ga0208303_1004018Not Available5238Open in IMG/M
3300025577|Ga0209304_1001606Not Available13403Open in IMG/M
3300025594|Ga0209094_1054556All Organisms → Viruses1023Open in IMG/M
3300025594|Ga0209094_1083059All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.754Open in IMG/M
3300025620|Ga0209405_1003663Not Available9244Open in IMG/M
3300025621|Ga0209504_1060549All Organisms → Viruses → Predicted Viral1112Open in IMG/M
3300025637|Ga0209197_1037387Not Available1771Open in IMG/M
3300025645|Ga0208643_1002332Not Available9507Open in IMG/M
3300025696|Ga0209532_1068598All Organisms → Viruses → Predicted Viral1331Open in IMG/M
3300025815|Ga0208785_1096570All Organisms → Viruses735Open in IMG/M
3300025860|Ga0209119_1081084Not Available1498Open in IMG/M
3300026479|Ga0228622_1047988All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1006Open in IMG/M
3300026483|Ga0228620_1085873All Organisms → Viruses659Open in IMG/M
3300026503|Ga0247605_1053707All Organisms → Viruses → Predicted Viral1003Open in IMG/M
3300026506|Ga0228604_1041252All Organisms → Viruses721Open in IMG/M
3300026511|Ga0233395_1131754Not Available608Open in IMG/M
3300028125|Ga0256368_1059141Not Available667Open in IMG/M
3300028131|Ga0228642_1026543All Organisms → Viruses → Predicted Viral1667Open in IMG/M
3300028280|Ga0228646_1063944All Organisms → Viruses909Open in IMG/M
3300028297|Ga0228617_1101001All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.705Open in IMG/M
3300028337|Ga0247579_1095887All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.581Open in IMG/M
3300028416|Ga0228614_1013592All Organisms → Viruses → Predicted Viral2210Open in IMG/M
3300028598|Ga0265306_10438512Not Available713Open in IMG/M
3300028599|Ga0265309_10074137Not Available1959Open in IMG/M
3300028599|Ga0265309_10473461Not Available830Open in IMG/M
3300028599|Ga0265309_10799478Not Available644Open in IMG/M
3300031658|Ga0307984_1067478All Organisms → Viruses → Predicted Viral1085Open in IMG/M
3300032277|Ga0316202_10189745All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.954Open in IMG/M
3300034375|Ga0348336_096123All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter lapidiphilus1019Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater22.22%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous17.59%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine11.11%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine11.11%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater8.33%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.63%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine3.70%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment3.70%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.85%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.85%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.85%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.85%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.93%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.93%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.93%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.93%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.93%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.93%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000929Marine plume microbial communities from the Columbia River - 15 PSUEnvironmentalOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001351Pelagic Microbial community sample from North Sea - COGITO 998_met_03EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022218Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_13EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023698Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 27R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024185Seawater microbial communities from Monterey Bay, California, United States - 84DEnvironmentalOpen in IMG/M
3300024191Seawater microbial communities from Monterey Bay, California, United States - 45DEnvironmentalOpen in IMG/M
3300024221Seawater microbial communities from Monterey Bay, California, United States - 80DEnvironmentalOpen in IMG/M
3300024226Seawater microbial communities from Monterey Bay, California, United States - 81DEnvironmentalOpen in IMG/M
3300024294Seawater microbial communities from Monterey Bay, California, United States - 78DEnvironmentalOpen in IMG/M
3300024314Seawater microbial communities from Monterey Bay, California, United States - 70DEnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300024328Seawater microbial communities from Monterey Bay, California, United States - 44DEnvironmentalOpen in IMG/M
3300024359Seawater microbial communities from Monterey Bay, California, United States - 34DEnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025577Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)EnvironmentalOpen in IMG/M
3300025594Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025621Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)EnvironmentalOpen in IMG/M
3300025637Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025696Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)EnvironmentalOpen in IMG/M
3300025815Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025860Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)EnvironmentalOpen in IMG/M
3300026479Seawater microbial communities from Monterey Bay, California, United States - 26DEnvironmentalOpen in IMG/M
3300026483Seawater microbial communities from Monterey Bay, California, United States - 23DEnvironmentalOpen in IMG/M
3300026503Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 91R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026506Seawater microbial communities from Monterey Bay, California, United States - 4DEnvironmentalOpen in IMG/M
3300026511Seawater microbial communities from Monterey Bay, California, United States - 27DEnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300028131Seawater microbial communities from Monterey Bay, California, United States - 53DEnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300028297Seawater microbial communities from Monterey Bay, California, United States - 18DEnvironmentalOpen in IMG/M
3300028337Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 38R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028416Seawater microbial communities from Monterey Bay, California, United States - 15DEnvironmentalOpen in IMG/M
3300028598Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300028599Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1002074763300000101MarineMCIVDHELNEHLDSLEQRSECMECGVDVSLGKHYCCFSCLNASNR*
DelMOSum2010_1026061013300000101MarineMEAFDEELNNYYESLEDSSECMECGVEVQLGKQYCCFSCLDASNR*
NpDRAFT_1014506823300000929Freshwater And MarineMCIVDHELNEHLDSLEERSECMECGVDVSLGKHYCCFSCLNASNR*
JGI20152J14361_1002219053300001344Pelagic MarineMDVFDHQLNEHLESSEQKSECMECGVDVQLGKQYCCFGCFDSSNR*
JGI20152J14361_1003444523300001344Pelagic MarineMEAFDEELNNYYESLEDSSECMECGIEVQLGKQYCCFSCLDASNR*
JGI20152J14361_1004110123300001344Pelagic MarineMEAFDEELNEYYXSLEESSECMXCGIEVQLGKRYCCFSCLDASNR*
JGI20152J14361_1006032723300001344Pelagic MarineDEELNEYYNSLEESSECMECGIEVQLGKRYCCFSCLDASNR*
JGI20154J14316_1004200533300001348Pelagic MarineMEAFDEELNNYYESLEDNSECMECGIEVQLGKQYCCFSCLDASNR*
JGI20153J14318_1006112113300001351Pelagic MarineMDVFNHQLNEHLESSEQKSECMECGVDVQLGKQYCCFG
JGI20153J14318_1007545713300001351Pelagic MarineMDVFDHQLNEHLESSEQKSECMECGVDVQLGKQYCCFG
JGI20153J14318_1009393923300001351Pelagic MarineMEAFDEELNEYYNSLEESSECMECGIEIQLGKRYCCFSCFDSSNK*
JGI20153J14318_1013191223300001351Pelagic MarineHQLNEHLESSEQKSECMECGVDVQLGKQYCCFGCFDSSNR*
JGI26260J51721_101149343300003580MarineMCIVDHELNDHLDSLEEKSECMQCGVDVSLGKDYCCFSCLNASNR*
JGI26260J51721_101379533300003580MarineMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR*
JGI26260J51721_104604723300003580MarineMEAFDEELNNYYESLEDNSECMECGVEIQLGKQYCCFSCLDASNR*
Ga0055584_10048433333300004097Pelagic MarineMEAFDEELNEYYNSLEESSECMECGIEVQLGKRYCCFSCLDASNR*
Ga0066222_120398913300004460MarineMEAFDEELNNYYESLEESSDCMECGVEVQLGKRYCCFSCLDASNR*
Ga0073579_117120023300005239MarineMEIFDEELNNYYESLEDNSECMECGIDVQLGKQYCCFSCLDASNR*
Ga0078893_1452752533300005837Marine Surface WaterMEVFDEELNEYYKSLEECSECMECGVQVQLGKKYCCFSCLDASNR*
Ga0075474_1014810923300006025AqueousIIMEGLDYDLNEYFDSIEDKSECMECGVDVQLGKQYCCFGCFNASHR*
Ga0075466_100849133300006029AqueousMDVFDHQLNEHLESSEENSECMECGVDVQLGKQYCCFNCFNASNR*
Ga0098044_1018940103300006754MarineMCIVDHELNEHLDSLEEKSECMECGVDVQLGKHYCCFSCLNASNR*
Ga0098055_135321713300006793MarineNNYYEYLEDNSECMECGIEIQLGKQYCCFSCLDASNR*
Ga0075467_1000620513300006803AqueousEVMCIVDHELNEHLDSLEQKSECMECGVDVSLGKHYCCFSCLNASNR*
Ga0070754_1004075433300006810AqueousMEGLDYDLNEYFDSIEDKSECMECGVDVQLGKQYCCFGCFNASHR*
Ga0070754_1020027833300006810AqueousMEGLDYDLNEYFDSIEDKSECMECGVDVQLEKQYCCFGCFNASHR*
Ga0075475_10010891123300006874AqueousYDLNEYFDSIEDKSECMECGVDVQLGKQYCCFGCFNASHR*
Ga0075475_1037520113300006874AqueousMEGLDYDLNEYFDSIEDKSECMECGVDVQLGKQYC
Ga0075468_10003162143300007229AqueousMCIVDHELNEHLDSLEQKSECMECGVDVSLGKHYCCFSCLNASNR*
Ga0070745_107561813300007344AqueousLDYDLNEYFDSIEDKSECMECGVDVQLGKQYCCFGCFNASHR*
Ga0070745_110923313300007344AqueousMEGLDYDLNEYFDSIEDKSECMECGVDVQLGKQYCC
Ga0070745_118651213300007344AqueousMEGLDYDLNEYFDSIEDKSECMECGVDVQLGKQYCCFGCFNASH
Ga0099847_1000736143300007540AqueousMEVFDQELNNHLEETSDCMECGVEIQLGKRYCCFSCFDSSNR*
Ga0115549_127366523300009074Pelagic MarineLFYYNTMEAFDEELNEYYNSLEESSECMECGIEVQLGKRYCCFSCLDASNR*
Ga0115549_130182223300009074Pelagic MarineTMEAFDEELNEYYNSLEESSECMECGIEIQLGKRYCCFSCFDSSNR*
Ga0115550_122360023300009076Pelagic MarineMEAFDEELNNYFESLEDSSECMECGIEVQLGKQYCCFSCLDASNR*
Ga0102812_1017570633300009086EstuarineTMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR*
Ga0115548_107530933300009423Pelagic MarineYNTMEAFDEELNEYYNSLEESSECMECGIEVQLGKRYCCFSCLDASNR*
Ga0115562_100994523300009434Pelagic MarineMEVFDEELNKHYRSLDESSECMECGIEVQLGKRYCCFSCLDASNR*
Ga0115559_136014723300009438Pelagic MarineRKKEVMCIVDHELNEHLDSLEERSECMECGVDVSLGKHYCCFSCLNASNR*
Ga0151671_114579923300011253MarineMAVFDEELNEYYKSLEESSECMECGIEVQLGKRYCCFSCLDASNR*
Ga0181392_115591833300017749SeawaterMCIVDHELNEHLDSLEERNECMECGVDVSLGKHYCCFSCL
Ga0181430_110587733300017772SeawaterMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCIDASNR
Ga0206125_1001555793300020165SeawaterMDVFNHQLNEHLESSEQKSECMECGVDVQLGKQYCCFGCFDSSNR
Ga0206125_1005011143300020165SeawaterMDVFDHQLNEHLESSEEKSECMECGVDVQLGKQYCCFNCFNASNR
Ga0206125_1013297123300020165SeawaterYYNTMEAFDEELNEYYNSLEESSECMECGIEVQLGKRYCCFSCLDASNR
Ga0206128_103281863300020166SeawaterDEELNNYYESLEDNSECMECGIEVQLGKQYCCFSCLDASNR
Ga0206128_118537613300020166SeawaterMEAFDEELNNYYESLEDNSECMECGIEVQLGKQYCCFSCLDASNR
Ga0206128_135784113300020166SeawaterNNYYESLEDNSECMECGIEVQLGKQYCCFSCLDASNR
Ga0206124_1018726233300020175SeawaterELNEHLDSLEERSECMECGVDVSLGKHYCCFSCLNASNR
Ga0206124_1031587513300020175SeawaterEVMCIVDHELNEHLDSLEERSECMECGVDVSLGKHYCCFSCLNASNR
Ga0206129_10021835133300020182SeawaterMCIVDHELNEHLDSLEERSECMECGVDVSLGKHYCCFSCLNASNR
Ga0206677_1004289763300021085SeawaterMCIVDHELNEHLDSLEERNECMECGVDVSLGKHYCCFSCLNASNR
Ga0213863_10003390133300021371SeawaterMEGLDYDLNEDLDSLEEKSECMECGVDVQLGKHYCCFSCLNASNR
Ga0222717_1015716713300021957Estuarine WaterLNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0222717_1016087333300021957Estuarine WaterMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0222717_1057170813300021957Estuarine WaterMCIVDHELNEHLDSLEEKSECMECGVDVSLGKHYCCFSCLNASNR
Ga0222718_10002279293300021958Estuarine WaterMEVFDKELNEYHKSLEESSECMECGVEVQLGKRYCCFSCLDASNR
Ga0222716_1046678213300021959Estuarine WaterELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0196889_104108413300022072AqueousEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0212020_106070913300022167AqueousMEGLDYDLNEYFDSIEDKSECMECGVDVQLGKQYCCFGCFNASHR
Ga0196887_1000487143300022178AqueousMCIVDHELNEHLDSLEQKSECMECGVDVSLGKHYCCFSCLNASNR
Ga0224502_1044912113300022218SedimentDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
(restricted) Ga0233412_1006299923300023210SeawaterMMEVFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
(restricted) Ga0233412_1024706813300023210SeawaterHELNDHLDSLEEKSECMQCGVDVSLGKDYCCFSCLNASNR
Ga0228682_100928313300023698SeawaterMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSC
Ga0228669_108147813300024185SeawaterTMEAFDEELNNYYESLEDNSECMECGVEIQLGKQYCCFSCLDASNR
Ga0228636_1003163103300024191SeawaterMEVFDEELNEYYKSLEESSECMECGIEVQLGKRYCCFSCLDASNR
Ga0228636_106790123300024191SeawaterNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0228666_103129813300024221SeawaterNTMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0228667_101249913300024226SeawaterMEAFDEELNNYYESLEDNSECMECGVEIQLGKQYCCFSCLDASNR
Ga0228667_104632423300024226SeawaterLPLFYYNTMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0228664_102468723300024294SeawaterMEVFDEELNEYYRSLEESSECMECGIEVQLGKRYCCFSCLDASNR
Ga0228657_105869913300024314SeawaterMDVFDHQLNEHLESSEEKSECMECGVDVQLGKQYCCFGCFDSSNR
Ga0228670_101525833300024319SeawaterMEVFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0228670_105741923300024319SeawaterKLPLFYYNTMEAFDEELNNYYESLEDNSECMECGVEIQLGKQYCCFSCLDASNR
Ga0228635_100387923300024328SeawaterMCIVDHELNEHLDSLEEKSECMECGVDVQLGKHYCCFSCLNASNR
Ga0228628_103726713300024359SeawaterFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCIDASNR
Ga0209557_102509883300025483MarineMCIVDHELNDHLDSLEEKSECMQCGVDVSLGKDYCCFSCLNASNR
Ga0208303_100401883300025543AqueousMEVFDQELNNHLEETSDCMECGVEIQLGKRYCCFSCFDSSNR
Ga0209304_1001606143300025577Pelagic MarineMDVFDHQLNEHLESSEQKSECMECGVDVQLGKQYCCFGCFDSSNR
Ga0209094_105455613300025594Pelagic MarineHQLNEHLESSEQKSECMECGVDVQLGKQYCCFGCFDSSNR
Ga0209094_108305923300025594Pelagic MarineMEAFDEELNNYFESLEDSSECMECGIEVQLGKQYCCFSCLDASNR
Ga0209405_1003663123300025620Pelagic MarineMEVFDEELNKHYRSLDESSECMECGIEVQLGKRYCCFSCLDASNR
Ga0209504_106054913300025621Pelagic MarineAFDEELNEYYNSLEESSECMECGIEVQLGKRYCCFSCLDASNR
Ga0209197_103738713300025637Pelagic MarineRKKEVMCIVDHELNEHLDSLEERSECMECGVDVSLGKHYCCFSCLNASNR
Ga0208643_100233263300025645AqueousMDVFDHQLNEHLESSEENSECMECGVDVQLGKQYCCFNCFNASNR
Ga0209532_106859853300025696Pelagic MarineMEAFDEELNEYYNSLEESSECMECGIEVQLGKRYCCF
Ga0208785_109657023300025815AqueousIMEGLDYDLNEYFDSIEDKSECMECGVDVQLGKQYCCFGCFNASHR
Ga0209119_108108453300025860Pelagic MarineMDVFNHQLNEHLESSEQKSECMECGVDVQLGKQYCCFGCFDSSN
Ga0228622_104798813300026479SeawaterMCIVDHELNEHLDSLEEKSECMECGVDVSLGKHYCCFS
Ga0228620_108587323300026483SeawaterHELNEHLDSLEEKSECMECGVDVSLGKHYCCFSCLNASNR
Ga0247605_105370713300026503SeawaterAFDEELNNYYESLEDNSECMECGVEIQLGKQYCCFSCLDASNR
Ga0228604_104125233300026506SeawaterDLELNEHLDSLEEKSECMECGVDVSLGKHYCCFSCLNASNR
Ga0233395_113175413300026511SeawaterYYNTMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0256368_105914123300028125Sea-Ice BrineMEAFDEELNNYYESLEESSDCMECGVEVQLGKRYCCFSCLDASNR
Ga0228642_102654343300028131SeawaterTMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCIDASNR
Ga0228646_106394443300028280SeawaterMCIVDHELNEHLDSLEERSECMECGVDVSLGKHYC
Ga0228617_110100113300028297SeawaterFYYNTMEAFDEELNNYYESLEDNSECMECGIEIQLGKQYCCFSCLDASNR
Ga0247579_109588713300028337SeawaterLFYYNTMEAFDEELNNYYESLEDNSECMEFGIEIQLGKQYCCFSCLDASNR
Ga0228614_101359233300028416SeawaterMEVFDKELNEYHKSLEESGECMECGVEVQLGKRYCCFSCLDASNR
Ga0265306_1043851223300028598SedimentMDVFDHQLNEHLKSSEQKSECMECGVDVQLGKQYCCFGCFDSSNR
Ga0265309_1007413753300028599SedimentMCIVDHELNEHLDSLEQRSECMECGVDVSLGKHYCCFSCLNASNR
Ga0265309_1047346113300028599SedimentMDVFDHQLNEHLKSSEQKSECMECGVDVQLGKQYCC
Ga0265309_1079947833300028599SedimentEELNNYYESLEDNSECMECGIEVQLGKQYCCFSCLDASNR
Ga0307984_106747813300031658MarinePLFYYKTMEALNEELNNYLDSSEDSSECMECGVDVQLGKRYCCFSCLDASNR
Ga0316202_1018974533300032277Microbial MatEAFDEELNNYYESLEDNSECMECGIEVQLGKQYCCFSCLDASNR
Ga0348336_096123_2_1123300034375AqueousEYFDSIEDKSECMECGVDVQLGKQYCCFGCFNASHR

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