Scaffold Ga0104756_1077290

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104756_1077290

Scaffold Ga0104756_1077290

Overview

Basic Information
Taxon OID	3300007352 Open in IMG/M
Scaffold ID	Ga0104756_1077290 Open in IMG/M
Source Dataset Name	Deep subsurface aquifer microbial community from Lead, South Dakota (DUSEL-D aquifer)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	National Aeronautics and Space Administration (NASA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1040
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Deep Subsurface Aquifer → Sanford Underground Research Facility - Deep Subsurface Aquifer Microbial Community From Lead, South Dakota

Source Dataset Sampling Location
Location Name	Lead, South Dakota, USA
Coordinates	Lat. (^o)	44.03416667	Long. (^o)	-103.76583333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044015	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104756_10772901	F044015	AGGAGG	MIIDLSAMERDLLKKLLDSHLAELRLEIAATKRGTSSLHEEEEILKGLQKKISELK

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