3300007352: Deep subsurface aquifer microbial community from Lead, South Dakota (DUSEL-D aquifer)

Overview

Basic Information

• IMG/M Taxon OID: 3300007352
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114793 | Gp0115775 | Ga0104756
• Sample Name: Deep subsurface aquifer microbial community from Lead, South Dakota (DUSEL-D aquifer)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Aeronautics and Space Administration (NASA)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 513212813
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sanford Underground Research Facility - Deep Subsurface Aquifer Microbial Community From Lead, South Dakota
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Deep Subsurface Aquifer → Sanford Underground Research Facility - Deep Subsurface Aquifer Microbial Community From Lead, South Dakota

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → aquifer → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Lead, South Dakota, USA
• Coordinates
  • Lat. (^o): 44.03416667
  • Long. (^o): -103.76583333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044015	Metagenome	155	Y
F053087	Metagenome	141	Y
F103371	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104756_1077290	Not Available	1040
Ga0104756_1162552	Not Available	602

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104756_1024465	Ga0104756_10244655	F103371	MISHPGYDIWKTSNPDDGRCEFCGAYPRECRGGWQPDCCTGECGCSWRDPDYERDLRNDQ
Ga0104756_1077290	Ga0104756_10772901	F044015	MIIDLSAMERDLLKKLLDSHLAELRLEIAATKRGTSSLHEEEEILKGLQKKISELK
Ga0104756_1162552	Ga0104756_11625521	F053087	FFPLSQKKVKHRRSEGLTLRTGVGPIQLKVWYGLDPGTQRWGNPMRQRWGLTPHQEMSPALEDKLAFTVTATRAYEEAARVARKWGCEVDDATLHALTQRLGARAEAQTQARLEQLPKELEPQRAASALAVFMLDGYQGRYRGPGWGEEETEQKRVEWHEIKVGVFYPLEQAARTAGDRGVLNEKVVVSWQGEGLEVGRR