NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103959_1187602

Scaffold Ga0103959_1187602


Overview

Basic Information
Taxon OID3300007214 Open in IMG/M
Scaffold IDGa0103959_1187602 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1355
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F043890Metagenome / Metatranscriptome155Y
F045692Metagenome / Metatranscriptome152Y
F093735Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0103959_11876021F093735N/AYTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ*
Ga0103959_11876023F043890N/AMQKTSSWATCNPNSIEKLQINCIDEEDGSTTIHIEWDENDPDLQWWTDLGEEGQKSFMIDALYEACACYVD*
Ga0103959_11876024F002738N/AMHSTKLALVMSIDTYGLSSEQYDEFFEDNIRFAAKLYLKTSQILSEVGAGALDYKTILDMYQETVYATNDDCRRYQKANNPEAIKGFDDIFSISPSREELLEQIQSVNVKVEALVDYISRLVETTTKGLEGIAETLVD*
Ga0103959_11876025F013517N/AMFESLLAAVLPVMKDLLWAAAGMLLTYCINKIQTQFN*
Ga0103959_11876026F045692N/AMTQITQTKLNELSVIKLYEHYGALERSLPLLTPESQELAKAELEACADLRSEKIDRIYYAMAAHEDALER
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