Scaffold Ga0070754_10000811

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10000811
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27094
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (9.80%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F023607	Metagenome / Metatranscriptome	209	Y
F026713	Metagenome / Metatranscriptome	197	Y
F088709	Metagenome / Metatranscriptome	109	N
F093884	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000081110	F088709	N/A	MGINYSTETSKSIIEEYEFRINALLKKIEFLEAQIEVSKQIFKDR*
Ga0070754_100008112	F023607	N/A	MHIYKLVFDTEQQGKQVLINNNVWEEVTIEGVTSMQYINGTKGVVNIGKVIDPAKTTDPEHPVYYDGWAYDVISTDELDFGSFEVYPADNAVHQFYGYPRNAEVPKP*
Ga0070754_1000081122	F093884	N/A	MKVNEALWDEVRKSIESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYEKK*
Ga0070754_1000081129	F010473	N/A	MELLRYEIKAGFFKGILFGIRHYPFEDKEIYEEDIVVYFGIFQLVITKIYRK*
Ga0070754_1000081135	F026713	N/A	MEWYDYLNPHEQKEYECSECGKPLEKDDGYCSGTCFEASML*