NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098055_1012326

Scaffold Ga0098055_1012326


Overview

Basic Information
Taxon OID3300006793 Open in IMG/M
Scaffold IDGa0098055_1012326 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3798
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033501Metagenome / Metatranscriptome177Y
F033962Metagenome / Metatranscriptome176N
F080236Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0098055_101232612F033962N/AMTMNELKEYVANQKRIKVAQWNKERQGNHCQGFTQKEFEQSMEVDRIKTRTRRTHSKGNLWNYYHTKDRELFTK*
Ga0098055_10123263F033501N/AMNATEFVNEMDRLAEVHFGEFGYDTCSEDEKKAVIKLLLHNLNK*
Ga0098055_10123267F080236N/AMNNIYDKKFELYLIKKGFNLDTISLQECLKQIKIWKSNTENA*

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