Scaffold Ga0098038_1011456

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1011456
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3469
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026158	Metagenome	199	Y
F047368	Metagenome	150	N
F052258	Metagenome	143	Y
F063169	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10114561	F047368	AGGCGG	MPKTCEAIKHAHTGEEALKHLATGSSKKGYKLKRSGVAIELLNIKKVDL*
Ga0098038_10114562	F026158	N/A	MVELIDTSETRASAVRCMESFKDKIEMLMKAGDILDHCTSGRSTREETAKARARSLKIWKETGCNISQAAEQGGADRGSFRRWLIKEGYHTAKTK*
Ga0098038_10114563	F052258	N/A	MKKTKHIATEHKLVKSEKEFEAAAILFACMVGAGIMVLLALAMR*
Ga0098038_10114567	F063169	GGAG	MENQLIDDILRHLNEFEKTGDWFYFSLALDALDDLKKEIENN*