Scaffold Ga0098038_1005367

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1005367
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5219
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068835	Metagenome	124	N
F072377	Metagenome / Metatranscriptome	121	N
F105332	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100536711	F068835	AGGAGG	MANLFNGYIDSYEMLDFLSDRLQDELNRINVEKSRGISSWTDTRYTRYDEQRYVIKQHHKYLQSLYKELEKAELLDDMAREGTE*
Ga0098038_100536712	F105332	AGGAGG	MAKTYWVKFNNKDFKQDKELVYKMLTDLRLQEINKEEK*
Ga0098038_100536713	F072377	AGGAGG	MSFVNQIDWNCGCMRMTEFNYRTHKERTVGRSYCNKKNCDRRLQKI*