Scaffold Ga0079301_1028289

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1028289
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1906
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058947	Metagenome	134	Y
F072283	Metagenome / Metatranscriptome	121	N
F077230	Metagenome	117	Y
F103146	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10282892	F058947	GAGG	MSIACELQDLEVLMNKAGVQLTGNAYDTAQDYLQDNCACATYQYLSGYKTAI*
Ga0079301_10282893	F072283	GGAG	MNTMQDLINAIKPILPNALIIDTDTGILIETGLELGLGGLLQTLEREEA*
Ga0079301_10282897	F103146	AGGTGG	MSEPRYLEGDEYALNGIEGEEEDTGDTGLPDRMWEDEE*
Ga0079301_10282899	F077230	AGGAG	MNKWVRSGLILMATLALLTQGHNQLFPPTTAGRIPDGVIENRKATKDEKD