Scaffold Ga0070744_10002116

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10002116
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5989
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F014017	Metagenome / Metatranscriptome	266	Y
F026561	Metagenome / Metatranscriptome	197	Y
F031101	Metagenome	183	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000211614	F031101	GGTGG	MNDLFWYSRKLREAVSTTGMENGWDDEKCKEVFDQLMDKYLVSKDLK*
Ga0070744_100021162	F014017	N/A	MDDLIKYLDENHRKKIADEIRYLELPPEWRPNEVIRYIVRIIEKNNG*
Ga0070744_100021164	F073565	AGGAG	MTNGNDLTGFNEVKAPTTTAWNGEQYAADPASAFPATDKSTQDGSGVGNGGK*
Ga0070744_100021165	F001280	GGCGG	MCIECGCEAFGSETGIVPVTVTDVSTDGESGLTLSMTSTPEQTRQFINE*
Ga0070744_100021166	F026561	N/A	MSNFQKDDGTGMTPPPAAGSASGAVTSREATRKNPKQGFRSGIKIDTNKHGIRRETSLDPKPPRKTRPKKV*
Ga0070744_100021168	F006846	AGGA	MIHDLVERYLMRPKRLREAIQHVVRENDELLRIIKRHEEDDTPTNLTWSEGDTWYGWTYSPEKKRYYFDDIGNKSLMGLWEDQWAREKERGE*