Scaffold Ga0100242_108075

Overview

Basic Information

• Taxon OID: 3300006482
• Scaffold ID: Ga0100242_108075
• Source Dataset Name: Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Agriculture and Agri-Food Canada
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27823
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (88.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada

Source Dataset Sampling Location

• Location Name: Sherbrooke, QC, Canada
• Coordinates
  • Lat. (^o): 45.4
  • Long. (^o): -71.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022442	Metagenome / Metatranscriptome	214	Y
F033483	Metagenome / Metatranscriptome	177	Y
F105193	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100242_1080754	F022442	AGGGGG	MTFRPAGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGAYEDVEQGLRLRRSQTDRSLMLTEQGRVYSMPIRAVHDVREGREESCGISLLVTDARQLDDAHSRQTVLEVRA*
Ga0100242_10807540	F105193	GGGGG	MAPLTLALDYDNPTALLETDGDGQPRRIYLVIDWASEIISAETRAHDDNTRSEYRWRGMGDAYTLPPLVDATQIREWVEDEVLPRAAPLLGAYETVWEDIEQFGRFPGHEDEKNDFDAWMDRIEPPLHDGGLWHVGDWLSGGVPDLSHETTDAAIESLADRIVEEAAAENVVIVAGREAVRAYLLDYRQDLRDAIPEPDCYQIRGYVVLEGVAKNFGGTAHVTLARKYSGKRVKIVVLDP
Ga0100242_1080755	F033483	GGAGG	VTSGDASVSFDIDGLPVELVLPECCIEAMGCAYRASCILQEGRGDE*