3300006482: Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C10

Overview

Basic Information

• IMG/M Taxon OID: 3300006482
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117456 | Gp0124032 | Ga0100242
• Sample Name: Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C10
• Sequencing Status: Permanent Draft
• Sequencing Center: Agriculture and Agri-Food Canada
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43383381
• Sequencing Scaffolds: 2
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Sherbrooke, QC, Canada
• Coordinates
  • Lat. (^o): 45.4
  • Long. (^o): -71.9
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F022442	Metagenome / Metatranscriptome	214	Y
F033483	Metagenome / Metatranscriptome	177	Y
F105193	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100242_108075	All Organisms → cellular organisms → Archaea → Euryarchaeota	27823
Ga0100242_108077	All Organisms → cellular organisms → Bacteria	5597

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100242_108075	Ga0100242_1080754	F022442	MTFRPAGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGAYEDVEQGLRLRRSQTDRSLMLTEQGRVYSMPIRAVHDVREGREESCGISLLVTDARQLDDAHSRQTVLEVRA*
Ga0100242_108075	Ga0100242_10807540	F105193	MAPLTLALDYDNPTALLETDGDGQPRRIYLVIDWASEIISAETRAHDDNTRSEYRWRGMGDAYTLPPLVDATQIREWVEDEVLPRAAPLLGAYETVWEDIEQFGRFPGHEDEKNDFDAWMDRIEPPLHDGGLWHVGDWLSGGVPDLSHETTDAAIESLADRIVEEAAAENVVIVAGREAVRAYLLDYRQDLRDAIPEPDCYQIRGYVVLEGVAKNFGGTAHVTLARKYSGKRVKIVVLDP
Ga0100242_108075	Ga0100242_1080755	F033483	VTSGDASVSFDIDGLPVELVLPECCIEAMGCAYRASCILQEGRGDE*
Ga0100242_108077	Ga0100242_1080773	F003987	MIPALPCGTYSDGDTPAGAFFVAAFEDGDQPHHVTECRIETVLRALRALQACGYDDVEVGSIERDGKTHLLLIGLDGEARFGDRQMGCIAVMPVEVP*
Ga0100242_108077	Ga0100242_1080775	F004383	VTGEPNPALLESAFMARIKADEYRDALAALQKEFDERPDVIEIKRQIEYYEEARRQRIEQAKAEGVTKQGSFLLKIRTRKQRTVIPERFFARFGAETFVRCSTVAIGKAEAEVGKGTFDDCCEVEVKEIGVSVEYERPEAGE*