Scaffold Ga0097691_1000042

Overview

Basic Information

• Taxon OID: 3300006055
• Scaffold ID: Ga0097691_1000042
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113840
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020391	Metagenome	224	Y
F040936	Metagenome / Metatranscriptome	161	Y
F076368	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0097691_1000042118	F020391	N/A	VIASLGAWWYRYTGTPEYSLSRLGHAVRAKNYGEASKYVDEERIANAISQSLTDVLLAKYTQKFKDDPLPFTDTRIELLHKMAPRFHDWSLLGIRNAIRLLLSGTGLLTGSTGFKVLDEHNFSGLHPVRSTVNGDVADVVIVGLPQPNPFDLNEIHVRMLRIPNSRQWRIEEIPDATPIFARYFNAPMPPVQP*
Ga0097691_100004219	F040936	GGAGG	MTGPVALKAAYVVTWAIQFGYLGYLLSRYRKVREEMKDLKRSS*
Ga0097691_10000426	F076368	AGGAG	MSYVVHVTMTEEEEAKRKPALGGKVHVEGQFEYNNLEIAREAAEIACNAAAKMRPSRSKTIDDDDWTEHPDRSD*