Scaffold Ga0070743_10039824

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10039824
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1610
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F029434	Metagenome / Metatranscriptome	188	Y
F050376	Metagenome / Metatranscriptome	145	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100398244	F085708	GGA	MNRLLTTAVQLAIGIPALYMARLMWLEIVADFREWDKSH*
Ga0070743_100398245	F050376	AGG	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAN*
Ga0070743_100398246	F000447	AGGAGG	MGYVEIFRMDEEGAGWVDLSEATPDELFNIELGLLEEGAFE*
Ga0070743_100398247	F029434	AGG	MKKYTFGVWLDIDAEDENQAVSLFDSVVKNTFVSDSYCFEWKEVADEIAV*
Ga0070743_100398248	F001562	GAGG	MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFAIGLVEHEDYLAEIENE*