Scaffold Ga0079957_1014742

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1014742
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5695
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008081	Metagenome / Metatranscriptome	339	Y
F024318	Metagenome	206	Y
F044503	Metagenome	154	Y
F047062	Metagenome	150	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101474212	F024318	N/A	MSHYLYLGKFIKRPGDLAPKGVKSTCQEERLPFNETFERIWHLISSKK*
Ga0079957_101474217	F047062	N/A	MNYDSEHYFDQEIQFSYEGKDYLWIGDYTIEYYGEDESEYAPAYGEMEVRIDHTSSLLSYEDGCDLIPTASILLAVELEIERNQ*
Ga0079957_101474218	F008081	N/A	MEESEILNPFGYGKASKVIDENRKPAEWWWDYLDINQAIAENEFYILFEDGLLVKKGRSKFRTSQYLHGDRFKSFKQNYERF*
Ga0079957_10147422	F093880	AGAAG	METKQIQEMNDLNRDIWGMIVQAQKTKNWALIEINLKRLYSLQKKYINIINIMDYEVKGTTLAWKEEIRVRNKFEKQWFRDVAERNGHYKAMKENIDKYFKDEEIG*
Ga0079957_10147424	F044503	N/A	MRRRNLTEYEKELIFERWQDRIPTKVIAIELGVTYSCIYQQLKKRYLVG*