Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1014614 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1014614 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5725
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (63.16%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5725

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (63.16%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F006218	Metagenome / Metatranscriptome	378	Y
F011150	Metagenome / Metatranscriptome	294	Y
F034179	Metagenome / Metatranscriptome	175	Y
F090367	Metagenome / Metatranscriptome	108	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101461412	F004111	GAGG	MKEKIKQVNDLCAAHGTYINQHGKKTVSAWSKIKYFREVFGTEFGINCRIVEHSDRYVIMKCEILGYDPERIVASGYSKQFRDKPGYLEIAETFAITRALSFMGLCLEDLTSKEEYEELDIPVQPMNTKDTTSANNRYDVDVVNELIKKVSFAPHTAKLDFLWRANKDLLNQIKIKDQSTYNSILQRFNSKRDEITTQNEV*
Ga0079957_101461414	F011150	N/A	MCRNMDINYYHKQHEKIRQQFRHDAIMREIKKREDKLFRDMFIKTVLVLIIFVLIIYVISE*
Ga0079957_101461417	F090367	AGG	MKHKLTQYQEDKKLSNKDMAKLLGLKGTNPTVTLLRWKNCQRIPHPKFMKQITKLTNITPNNFYEAWYETHKL*
Ga0079957_101461418	F105047	GAGG	MKHINYDKVIVEWLDIQSCDNAWSSLDEFDKLIPAKCTTIGYLYDENKDWVKTFATYSINENSDDFDVGDAVVIPRGCIVSIKKIEN*
Ga0079957_101461419	F005175	GAG	MIDTPLTVEIVCEMYEEKILVLKKEIDRLNEEVQALNLELK
Ga0079957_10146142	F034179	N/A	MSDQITTMFAQSYSKKKPTLLAQQGVKAKVKIKKNGKKKS*
Ga0079957_10146145	F006218	N/A	MSNEGGWVINAERLNFCHSLEHSCYEIYFNNVRTKEKQALVNNTENDKRMNMYIEYLKKQKCKHKYQGEM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1014614

Overview

Ecosystem & Geography

Associated Families

Sequences