Scaffold Ga0079957_1004100

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1004100
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12201
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (48.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010525	Metagenome / Metatranscriptome	302	Y
F010681	Metagenome / Metatranscriptome	300	Y
F020890	Metagenome / Metatranscriptome	221	Y
F048809	Metagenome / Metatranscriptome	147	Y
F057119	Metagenome / Metatranscriptome	136	Y
F090331	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100410016	F057119	GGAG	MTFLLGMGLGSLLTIGAAFIFAADRNILDEGDENY*
Ga0079957_100410018	F090331	N/A	MTIGLGVVIYISLVAFVSSIMVYYFKVIYPREEAQIKENSK*
Ga0079957_100410025	F010525	N/A	MYTLYFLKSLAPFVGGMCLNNFTTKQGELCNLRKSPDYVVRYDKPNPEAACYRDGIFYPRCKDLENPEVLYYHNLLLKERQ*
Ga0079957_100410028	F048809	GGA	MKKFIRWFISPTKKHIIETGDVYSKLIELEERIVALEQENIETSNCLYELVNSIDAVDARIDILTLENWKNNDV*
Ga0079957_100410029	F010681	N/A	MKIRLTPNQHMWANIFRCAVERSNIYFAENDLDRHAREHTTVVLALQKGEQFWKELL*
Ga0079957_10041009	F020890	N/A	MDCFDDIQIEDFSSFDFVEEMNEGIFEEEDNDKSFNSFLNSNIDF*