Scaffold Ga0079957_1002727

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002727
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15323
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F030434	Metagenome	185	N
F068843	Metagenome / Metatranscriptome	124	Y
F085231	Metagenome	111	Y
F090388	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100272717	F068843	GGAG	MSYTDEDIAFLIKIGQITEAPVKETKTKAPVTEKIEE*
Ga0079957_10027272	F090388	AGGA	MALLRINCRVCAKLGKGMQTHKIVDEFVNLPPNVVCVQCLGCGVMGIEMLLDTQRAKDEDMLND*
Ga0079957_10027273	F030434	N/A	MAQIVQVILDRSQELQAAASGFARSTGEKANTPDHAGRYNTKINFHEFVAEHSEAAGAEIAVAQYMGIRNFIPTVNTFHDAPDIQVGNLGFEVKWTKYINGHLIIHKDYPRLTDVAILVCNKSPVYQIIGWMPVLWAKKAKYYNAADGNFWVSQRELFEMDALRKSVYGITED*
Ga0079957_10027276	F003067	N/A	MTAAQSLIAIAIGLCTLMGFAAGMVRHLVKYYLSELRMDNNGGHNLRGRVDRIEAKVDSIYEMLLQR*
Ga0079957_10027277	F085231	AGGAG	MKDQLIAAGVSYLRHAGTCAAALYMSGVTDPKTLANAFIAGLIGPLLRGLNHSDKTFGIK