Scaffold Ga0079957_1002239

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002239
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17109
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F033362	Metagenome	177	Y
F037637	Metagenome	167	Y
F050223	Metagenome	145	Y
F104496	Metagenome	100	N
F105026	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100223910	F024535	GGA	MAKKKINIDTDNIDVNLEKDGTNIKLDIDTKNVDIKIVRDEINKEFNLDSKNIDIDIKKTPDGVEVKVDAQGALWKAIAKRIVKFILRRFKVGK*
Ga0079957_100223912	F033362	N/A	MINVTQLIEVIKKQGAVGVLALWLAYTHFEVQDVKDRLYNCLDKNEYYNRKPIEERQPILPSVKNDTVAVVENKSRKLAKK*
Ga0079957_100223928	F050223	N/A	MIQLILELLKSDDFFGVSEIVDIAKGKHELTGNIKKIYKQEKRKQWLKKERLN*
Ga0079957_10022397	F037637	N/A	MNYGNKQKRTKQVNVSFEWTNKSDLIAILSDLRELIGSGVEMYHNQKKSLETADKWHEVEFRQKFVNKIHEEVESDINGELKLVIKSNF*
Ga0079957_10022398	F105026	N/A	MNSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0079957_10022399	F104496	N/A	MKKRTGILINSIIILLSYTYDSYLMLGAGVICLSLVLISKTKRHELKN*