Scaffold Ga0079957_1000316

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000316
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41661
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (44.44%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F010673	Metagenome	300	Y
F012111	Metagenome	283	N
F015354	Metagenome / Metatranscriptome	255	Y
F057903	Metagenome / Metatranscriptome	135	N
F066594	Metagenome / Metatranscriptome	126	N
F071018	Metagenome	122	N
F097206	Metagenome	104	Y
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100031614	F007361	GGA	MSVLFSLEPDCLGLHEQGATDPNWQKSIEGYRNRYRYVADCSTYGYLPKAIVHDSIKVYVKKDAEASAKECTERFGYEVHLPSVQALREYADKWAATHSVMTIGEGELFKVDTLRRIWVHCFHNERAFPEEKAARLVTMNIQRHEPEKVFSIENGNRLVKEVF*
Ga0079957_100031616	F005740	N/A	MKLIVQDIRSTIARAIGVCVDDARVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLGGDNVCVGKQLVDRGTVVSYRDMSGDTNSYIRVYRGDDSDIGKTITLQGIDANGNWIRTQGVDGVWIDGEKLTLAAPYVQSTKKFTTLTGVIREATNTASRLYEYNATTLLETDLAVYDPDETLPQYRRSYLADRCASDDSKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
Ga0079957_100031618	F012111	AGG	MSERAPRRYTDGTVTFEGGIDAGVMPSEVDKNQVSFAVNANFRQGFVSSRPGFVQKDYSLCVSITADNAEVTADQTNVTADGWSEECYGPQSLSGVFQCALPYIADDGRTFILMMISGNIWFYDVDQNKAQKLTVSPDLENPSNILDGWMVQAENFVVIQDGLSRPLIFNGTSLRRAADDEIKTGKVMAYLNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLSSGALGARSAITINGDVLYRAVDGVRSFVIARRSFSDYGNTPISSEMVNIIENDQTNLLWASSAVVFDNRLLMTSQPRYNSEGVIHKALSVLDFDLITSMRKKFPPAWAGIWTGLDALQVLKTENAYGDRCFCIARGSDSSIQIWEITKTDKFDSNTVEPKKEIEWMFQSRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFNVTYRPDQYPGWIEWIDFAECATTTQCLDLCPLTNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVMISIIGYCRIKSLRVHAYDVQESSVGECRSVYPACTPLDVCDVNPLTYSSESFITLA*
Ga0079957_100031621	F004664	N/A	MKGYKILNEHMVIPGGWNYRVPETGIEIMGGSLPQLHEFVRNHYIANAIAIPSNLDTLITEYSCLNGADCSFNEIEIPKPQGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEATRRASICSTCTYNRKPLGCTGCNARVLKEAVKTFSQHGSTPLDESLQSCEFCGCFIRSMVWFPIETLHKFSDDTENKNLPAHCWKKRSCTET*
Ga0079957_100031631	F015354	N/A	MNPNVSSLIRHGLSALGGFLVAKGLASADQVAEIAGATVTLIGAVWSIWKNKQSAASAPAKQTE*
Ga0079957_100031639	F005388	N/A	MACSNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENQGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRYADQGSGAGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNPSWVTAPYEAAFVVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLNTDCVDPLDKKGQHYAEFIHASEPVFTNQGMTIIFRRCTGALTQIICS*
Ga0079957_10003164	F097206	AGGAGG	MRRANRPPSKDELKELLVAAFAAGVVITAAYFMLFIVK*
Ga0079957_100031641	F000922	GGA	VTKNQWEHAKSLYLAGAEWKAIANDLQLSQATLQTKASREGITKVKAQMQTICTEKKTQSLEALSAIVRSKLAEDAAATIERVNGYDLDGIKDESTREQILGSVAKRSALVFGWSEQGEATSVSINLLGSMPDKFHVEQVVSEPSDK*
Ga0079957_100031646	F010673	N/A	MNPKLIPILERIIAREPILSSFHADNLPQSALAYVRERYVMCRSLSWEEQDLIETLPPFADNIADSFRDGTAPDASVYHLFDDGSLWLKTNAYSSVWADATDYAVEILLPRMELSRIDAELLRAIEMDDAVESVRSDFFGAFARILNRDCGIPFHESRIHWDAWSRQAPDSLIEQLELGGLESGTAEGNRFAADFLATLKNA*
Ga0079957_100031647	F103133	N/A	MRYKIQMQSANGGWSDLRESSDDGRTYETCLFPTRMAAVAARGEVSELFEFLESLRIVPAETPETENIYA*
Ga0079957_100031652	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIITGETEEHGATPMSIYDDDKHICSITAANGEQILELIIEREVGDRLCPVFEGNPDEEKLP*
Ga0079957_100031655	F001964	N/A	MSGKNLFGPAKFKVQISGAIGWSDLKQRVVRFETVEFASRKEAEKSAKELNPGEYTQGRIRVVPVDMPEDYDVYPVAERSRDNSKSS*
Ga0079957_100031657	F071018	N/A	MSYLENGATHRSMFRLMEPLHHDADPNRSQVLAHIMENMQCDLGRAIRAFNSMRHPKSKVLVFDHVHRMWKGCDWLPENENSKDAMILVEHRALERRVIAMDGELKKALKEIKRLNKQMADLYTDAKEMGQSDGGEDQKTMVEQMNEIFGKPPAKSRKSKVQQPMNTTESLVAQAWS*
Ga0079957_10003166	F057903	GGAG	MPMGPDISTTLLKMKYKNSGNSSIQVDVICDDVEIRIGETKWSGIIYTREGKSKVYVRTKAEFKAKFVPIDEKP*
Ga0079957_100031661	F003748	N/A	MFKVNRKDAGSNYINAEGEYIVTVMKIEETLDAKGREVCKVTFATDEGASIADRFINQENVWFRVNQLVAATNHNVPDGTEVDFLGVKGSYANFLRSMIGLNLVITVRAEEYDFNGEKKKAYRIKNMKGFTAQTEAEEKPF*
Ga0079957_10003167	F066594	N/A	MRSPNLYIGAQEQLFAKFQSRSIAIQHWSKYLMTPKELALLFRKLEKSNSVLSEIAKTDLGRSGELARKQLGIE*