Scaffold Ga0066903_100333279

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100333279
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2435
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F045919	Metagenome	152	Y
F059390	Metagenome / Metatranscriptome	134	Y
F077695	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1003332792	F031594	AGGAG	MSVRPVVFNVDGSIAVVYDELGHSGTIPAAEIRWATSIDGSPNHSFIVLNCPDGCGASSTHPVGGGAAPAEVQQMFVHKTELEGCACGNVAAASNAVPEAHVHLNVARMDGEERWQLG*
Ga0066903_1003332794	F077695	GGA	MTDYNIGPGVAQAIADNGDEARSDERYIILDEGHRVSLTLARDGQYWWYEEDNRVNRVPFR*
Ga0066903_1003332795	F045919	N/A	MASTGGTRRITGSTGCPFGDEPTPAPYDPWTSQPGQLYDWTCSACSLEWLKRATGLVVTDDVYGSRETTVYEIGYPNNINPQVGLTNADGSALQAVLESYGRESSQSWLDFDTVYELAQSTSGMLSGAAWYHWVGLRGVQGSNLWVANSAPGYKGVYDTLSRDDFNRLGGFSVVWLV*
Ga0066903_1003332796	F059390	AGG	MQITTVGSVSVTVGWLIAIMILILAILGLVGVLANTPLIVFGLIGGLAISRLL*