Scaffold Ga0066905_100239752

Overview

Basic Information

• Taxon OID: 3300005713
• Scaffold ID: Ga0066905_100239752
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1385
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002340	Metagenome / Metatranscriptome	569	Y
F090934	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_1002397522	F090934	AGCAGG	MKTLLSALVALSVVSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0066905_1002397523	F002340	GGAG	MKTILSALVALSLIAGVAASASAFDPKAFFDQVDREHN*
Ga0066905_1002397524	F002340	AGGAG	MKTILSALLALSVIAGVAGSASALDAKSFYEQVDRDHN*
Ga0066905_1002397525	F002340	GGAG	MKTILSALVALSLIAGVAGSASALDAKSFYEQVDRDHN*