NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090934

Metagenome / Metatranscriptome Family F090934

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090934
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 44 residues
Representative Sequence MKTLISALLALSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT
Number of Associated Samples 54
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 76.85 %
% of genes near scaffold ends (potentially truncated) 17.59 %
% of genes from short scaffolds (< 2000 bps) 77.78 %
Associated GOLD sequencing projects 48
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (58.333 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(52.778 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.296 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 48.61%    β-sheet: 0.00%    Coil/Unstructured: 51.39%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF12770CHAT 6.48
PF04055Radical_SAM 4.63
PF06463Mob_synth_C 4.63
PF01979Amidohydro_1 2.78
PF06808DctM 2.78
PF02668TauD 2.78
PF01755Glyco_transf_25 1.85
PF00941FAD_binding_5 0.93
PF13193AMP-binding_C 0.93
PF13231PMT_2 0.93
PF05231MASE1 0.93
PF00753Lactamase_B 0.93
PF13546DDE_5 0.93
PF03328HpcH_HpaI 0.93
PF14031D-ser_dehydrat 0.93
PF00005ABC_tran 0.93
PF04972BON 0.93
PF03232COQ7 0.93
PF00270DEAD 0.93
PF13545HTH_Crp_2 0.93
PF00156Pribosyltran 0.93
PF16576HlyD_D23 0.93
PF13426PAS_9 0.93
PF00501AMP-binding 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG2896GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)Coenzyme transport and metabolism [H] 4.63
COG2175Taurine dioxygenase, alpha-ketoglutarate-dependentSecondary metabolites biosynthesis, transport and catabolism [Q] 2.78
COG3306Glycosyltransferase involved in LPS biosynthesis, GR25 familyCell wall/membrane/envelope biogenesis [M] 1.85
COG0469Pyruvate kinaseCarbohydrate transport and metabolism [G] 0.93
COG0642Signal transduction histidine kinaseSignal transduction mechanisms [T] 0.93
COG2301Citrate lyase beta subunitCarbohydrate transport and metabolism [G] 0.93
COG2941Demethoxyubiquinone hydroxylase, CLK1/Coq7/Cat5 family (ubiquinone biosynthesis)Coenzyme transport and metabolism [H] 0.93
COG3447Integral membrane sensor domain MASE1Signal transduction mechanisms [T] 0.93
COG38362-keto-3-deoxy-L-rhamnonate aldolase RhmACarbohydrate transport and metabolism [G] 0.93
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms58.33 %
UnclassifiedrootN/A41.67 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000363|ICChiseqgaiiFebDRAFT_12762783Not Available526Open in IMG/M
3300000550|F24TB_10070305Not Available803Open in IMG/M
3300000858|JGI10213J12805_10006612All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1562Open in IMG/M
3300004281|Ga0066397_10129374Not Available558Open in IMG/M
3300004479|Ga0062595_100797656Not Available777Open in IMG/M
3300005332|Ga0066388_100006911All Organisms → cellular organisms → Bacteria → Proteobacteria8233Open in IMG/M
3300005332|Ga0066388_100460966All Organisms → cellular organisms → Bacteria1912Open in IMG/M
3300005332|Ga0066388_100661323All Organisms → cellular organisms → Bacteria1658Open in IMG/M
3300005332|Ga0066388_102203507All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales994Open in IMG/M
3300005332|Ga0066388_102416966All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300005332|Ga0066388_102566672Not Available927Open in IMG/M
3300005332|Ga0066388_103157521Not Available842Open in IMG/M
3300005332|Ga0066388_105948652Not Available616Open in IMG/M
3300005332|Ga0066388_108213625Not Available521Open in IMG/M
3300005332|Ga0066388_108776228Not Available502Open in IMG/M
3300005341|Ga0070691_10006658All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5289Open in IMG/M
3300005713|Ga0066905_100000836All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales9609Open in IMG/M
3300005713|Ga0066905_100003435All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales6230Open in IMG/M
3300005713|Ga0066905_100032908All Organisms → cellular organisms → Bacteria2968Open in IMG/M
3300005713|Ga0066905_100133829All Organisms → cellular organisms → Bacteria1756Open in IMG/M
3300005713|Ga0066905_100179809All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1559Open in IMG/M
3300005713|Ga0066905_100186121Not Available1537Open in IMG/M
3300005713|Ga0066905_100239752All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium1385Open in IMG/M
3300005713|Ga0066905_100366780All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1156Open in IMG/M
3300005713|Ga0066905_100470030Not Available1038Open in IMG/M
3300005713|Ga0066905_101118523Not Available700Open in IMG/M
3300005713|Ga0066905_102303825Not Available503Open in IMG/M
3300005719|Ga0068861_100123459All Organisms → cellular organisms → Bacteria2092Open in IMG/M
3300005764|Ga0066903_100285275Not Available2593Open in IMG/M
3300005764|Ga0066903_100301070All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2537Open in IMG/M
3300005764|Ga0066903_101379334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1322Open in IMG/M
3300005937|Ga0081455_10000412All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria56264Open in IMG/M
3300005937|Ga0081455_10000994All Organisms → cellular organisms → Bacteria35958Open in IMG/M
3300005983|Ga0081540_1000205All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria61689Open in IMG/M
3300005983|Ga0081540_1000515All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria37910Open in IMG/M
3300006163|Ga0070715_10184996All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1047Open in IMG/M
3300006196|Ga0075422_10048368All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne1534Open in IMG/M
3300006358|Ga0068871_101214342All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales707Open in IMG/M
3300006844|Ga0075428_100136182All Organisms → cellular organisms → Bacteria2670Open in IMG/M
3300006852|Ga0075433_10003351All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria12384Open in IMG/M
3300006852|Ga0075433_10251082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1569Open in IMG/M
3300006852|Ga0075433_10322482All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1367Open in IMG/M
3300006852|Ga0075433_10433357Not Available1159Open in IMG/M
3300006871|Ga0075434_100843521All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae932Open in IMG/M
3300006904|Ga0075424_102081340Not Available598Open in IMG/M
3300009094|Ga0111539_10010044All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria11930Open in IMG/M
3300009094|Ga0111539_10270846All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1976Open in IMG/M
3300009094|Ga0111539_10699527All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans1180Open in IMG/M
3300009094|Ga0111539_11505537All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300009094|Ga0111539_12385205Not Available614Open in IMG/M
3300009100|Ga0075418_10451544All Organisms → cellular organisms → Bacteria1377Open in IMG/M
3300009100|Ga0075418_12167543Not Available606Open in IMG/M
3300009100|Ga0075418_12241090Not Available596Open in IMG/M
3300009146|Ga0105091_10126515Not Available1187Open in IMG/M
3300009156|Ga0111538_11104733All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1003Open in IMG/M
3300009156|Ga0111538_12858613Not Available604Open in IMG/M
3300009168|Ga0105104_10606010Not Available623Open in IMG/M
3300009987|Ga0105030_128537Not Available515Open in IMG/M
3300010043|Ga0126380_10022341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium3062Open in IMG/M
3300010043|Ga0126380_10152763All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1481Open in IMG/M
3300010043|Ga0126380_11279411All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales637Open in IMG/M
3300010046|Ga0126384_10000111All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales35873Open in IMG/M
3300010047|Ga0126382_10057761All Organisms → cellular organisms → Bacteria2311Open in IMG/M
3300010047|Ga0126382_10295486All Organisms → cellular organisms → Bacteria → Proteobacteria1213Open in IMG/M
3300010047|Ga0126382_10690498Not Available855Open in IMG/M
3300010047|Ga0126382_10730434Not Available835Open in IMG/M
3300010047|Ga0126382_11022703Not Available726Open in IMG/M
3300010360|Ga0126372_10316768All Organisms → cellular organisms → Bacteria1380Open in IMG/M
3300010360|Ga0126372_10705228All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales986Open in IMG/M
3300010362|Ga0126377_10110064All Organisms → cellular organisms → Bacteria2528Open in IMG/M
3300010362|Ga0126377_10366068All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1443Open in IMG/M
3300010362|Ga0126377_10928816Not Available934Open in IMG/M
3300010362|Ga0126377_12838272Not Available559Open in IMG/M
3300010362|Ga0126377_13095481Not Available537Open in IMG/M
3300010398|Ga0126383_12327755Not Available621Open in IMG/M
3300010400|Ga0134122_10007932All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria7915Open in IMG/M
3300010868|Ga0124844_1320901Not Available510Open in IMG/M
3300012496|Ga0157353_1035255Not Available552Open in IMG/M
3300015371|Ga0132258_10136080All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae5868Open in IMG/M
3300015371|Ga0132258_11376453All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1783Open in IMG/M
3300015372|Ga0132256_102123338Not Available667Open in IMG/M
3300025905|Ga0207685_10549350All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales614Open in IMG/M
3300025937|Ga0207669_11800225All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales523Open in IMG/M
3300026067|Ga0207678_11797248Not Available537Open in IMG/M
3300026118|Ga0207675_100276872All Organisms → cellular organisms → Bacteria1629Open in IMG/M
3300027646|Ga0209466_1108385Not Available564Open in IMG/M
3300027787|Ga0209074_10142989All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales853Open in IMG/M
3300027907|Ga0207428_10021995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5387Open in IMG/M
3300027907|Ga0207428_10310462Not Available1166Open in IMG/M
3300027907|Ga0207428_10414226All Organisms → cellular organisms → Bacteria986Open in IMG/M
3300027907|Ga0207428_10457138All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales930Open in IMG/M
3300031677|Ga0307480_1008049Not Available698Open in IMG/M
3300031677|Ga0307480_1008959Not Available675Open in IMG/M
3300031677|Ga0307480_1024266Not Available504Open in IMG/M
3300031720|Ga0307469_10068843All Organisms → cellular organisms → Bacteria2334Open in IMG/M
3300031740|Ga0307468_100042499Not Available2295Open in IMG/M
3300031740|Ga0307468_100262292Not Available1224Open in IMG/M
3300031820|Ga0307473_10378776All Organisms → cellular organisms → Bacteria920Open in IMG/M
3300031820|Ga0307473_10588168All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300031858|Ga0310892_10556713Not Available771Open in IMG/M
3300032075|Ga0310890_11235941Not Available609Open in IMG/M
3300032174|Ga0307470_10204140All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1266Open in IMG/M
3300032174|Ga0307470_10926227All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales687Open in IMG/M
3300032180|Ga0307471_101283592All Organisms → cellular organisms → Bacteria895Open in IMG/M
3300032205|Ga0307472_100399086All Organisms → cellular organisms → Bacteria1149Open in IMG/M
3300032205|Ga0307472_100913175All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales814Open in IMG/M
3300034818|Ga0373950_0117692Not Available585Open in IMG/M
3300034820|Ga0373959_0090668Not Available716Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil25.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere20.37%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil15.74%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil12.04%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere3.70%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.78%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.85%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.85%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil1.85%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.93%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.93%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000858Soil microbial communities from Great Prairies - Wisconsin Native Prairie soilEnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009146Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009987Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaGHost-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010868Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)EnvironmentalOpen in IMG/M
3300012496Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300031677Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300034818Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3Host-AssociatedOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiFebDRAFT_1276278323300000363SoilMKTLISALLALSVLTASAASAMADKVPPWIWEQLDRDGHGAVSDLS*
F24TB_1007030523300000550SoilMKTVISALVALSILSGYSASAFADKVPQSIWEQLDREGRGGHPT*
JGI10213J12805_1000661243300000858SoilMKTVLSALIALSVLSGFAASASADRVPQSIWEQLDRDGRGGHPT*
Ga0066397_1012937423300004281Tropical Forest SoilMKTLIPALLALSVLLSVLGALSVLSGYAASALADKVPPSIWEQLDRDGHPG*
Ga0062595_10079765613300004479SoilMKTLICAVVALSVLSGYAGSAMADKVPPSIWEQLDRDGRGGHPT*
Ga0066388_10000691163300005332Tropical Forest SoilMKTLMSALVALAVLAGSAASALADKVPPSIWEQLDREGHSISG*
Ga0066388_10046096623300005332Tropical Forest SoilMKTLIPALLALSVLLSVLGALSVLSGYAASALADKVPPSIWEQLDRDGHAG*
Ga0066388_10066132313300005332Tropical Forest SoilMKRIMSGLLALSVLLGYAASAMADKVPPSIWEQLDRDGRGGHPT*
Ga0066388_10220350733300005332Tropical Forest SoilMKTVISALVALSVLSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0066388_10241696623300005332Tropical Forest SoilVEDPAIKALLSTVLALSLLSGYAASALADKVPQSIWDELDRDGRGGHPT*
Ga0066388_10256667213300005332Tropical Forest SoilMKTVISALVALSVLSGYAASALADKVPQSIWEQLDRDGRGGHPT*
Ga0066388_10315752123300005332Tropical Forest SoilMKRLLSALVALSVVSGYAATALADQVPQSIWEQLDSDGRGGHPT*
Ga0066388_10594865223300005332Tropical Forest SoilMKALFSALLALSLLSGYAASAFADQAPKSIWDELDRDGRGG
Ga0066388_10821362513300005332Tropical Forest SoilMKMIVSAFLALSVLTGYAASALADKVPPAILEQLDREGHAS*
Ga0066388_10877622813300005332Tropical Forest SoilMKTLISALVALSVLSGYAASAMADKVPPSIWEQLDREGRGGHPT*
Ga0070691_1000665873300005341Corn, Switchgrass And Miscanthus RhizosphereMKTVISALVALSALSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0066905_10000083663300005713Tropical Forest SoilMKAILSALVALSVLSGTAGSALADKVPASIWEQLDRDGH*
Ga0066905_10000343543300005713Tropical Forest SoilMQTLISALVALSILSGSAASALADKVPPSIWEQLDRDGRGGHPT*
Ga0066905_10003290833300005713Tropical Forest SoilMKMMISALLALSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT*
Ga0066905_10013382913300005713Tropical Forest SoilMKTVISALVALSVLSGYAASAFADKVPQSIWEQLDREGR
Ga0066905_10017980933300005713Tropical Forest SoilMKTLISALLALSVLSGYAASAFADKVPQSIWEQLDREGRGGHPS*
Ga0066905_10018612133300005713Tropical Forest SoilMKMLISGLVALSVLSGYGASALADKVPQSIWEQLDRDGRGGHLI*
Ga0066905_10023975223300005713Tropical Forest SoilMKTLLSALVALSVVSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0066905_10036678043300005713Tropical Forest SoilMKALFSALLALSLLSGYAASAFADQAPKSIWDELDRDGRGGHPT*
Ga0066905_10047003023300005713Tropical Forest SoilMKTLISALLALSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT*
Ga0066905_10111852313300005713Tropical Forest SoilSGTMQTLISALVALSILSGSAAPALADKVPQSIWEQLDWDGRGGHPT*
Ga0066905_10230382513300005713Tropical Forest SoilMKTLISALVALSVLSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0068861_10012345933300005719Switchgrass RhizosphereMKRIISALLVLSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT*
Ga0066903_10028527543300005764Tropical Forest SoilLRRIAIKALFCVLLALSLLSGYAASAFADQAPKSIWDELDRDGRGGHPT*
Ga0066903_10030107043300005764Tropical Forest SoilMKRLLSALVALSVVSGYAATALADQVPQSIWEQLDREGRGGHPT*
Ga0066903_10137933413300005764Tropical Forest SoilIEAVVISGLLALSVLSGYAGSAMADKVPPSIWERLDRDGRGGHPT*
Ga0081455_10000412193300005937Tabebuia Heterophylla RhizosphereMQTLISALVALSVLSGSAASALADKVPPSIWEQLDRDGRGGHPT*
Ga0081455_10000994503300005937Tabebuia Heterophylla RhizosphereMQTLISALVALSILSGSAASALADKVPRSIWEQLDWDGRGGHPT*
Ga0081540_1000205373300005983Tabebuia Heterophylla RhizosphereMKMIVSALLALSVLSGYAASALADKVPPAIWEQLDRDGHPT*
Ga0081540_100051573300005983Tabebuia Heterophylla RhizosphereMKTMISALVVLSVLSGYAASAFADKVPKSIWEQLDREGYGGDSTIS*
Ga0070715_1018499623300006163Corn, Switchgrass And Miscanthus RhizosphereMKTVISALLALSVLSGYAASAFADKVPQSIWEELDRDGRGGHPT*
Ga0075422_1004836833300006196Populus RhizosphereALKTIMSALLALSVVSGYAATAFADTVPQSIWEQLDREGRGGHPT*
Ga0068871_10121434213300006358Miscanthus RhizosphereSALVALSVLSGYAASAFADKVPQSIWEQLDRDGRGGHPT*
Ga0075428_10013618233300006844Populus RhizosphereMKTVISALVALSILSGYSASAFADKVPQSIWEQLDREGHGGHPT*
Ga0075433_1000335153300006852Populus RhizosphereMKTIMSALLALSVVSGYAATAFADTVPQSIWEQLDREGRGGHPT*
Ga0075433_1025108223300006852Populus RhizosphereMKTLICAVVALSVLSGYAASAIADKVPPSIWEQLDRDGRGGHPT*
Ga0075433_1032248233300006852Populus RhizosphereMKAVLSAFVALSVLSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0075433_1043335723300006852Populus RhizosphereMKRIISALLALSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT*
Ga0075434_10084352113300006871Populus RhizosphereVLSAFVALSVLSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0075424_10208134023300006904Populus RhizosphereMKTLMSVLVTLAVLSGSTASALADKVPPSIWEQLDREGHSHSG*
Ga0111539_1001004453300009094Populus RhizosphereMSALLALSVVSGYAATAFADTVPQSIWEQLDREGRGGHPT*
Ga0111539_1027084613300009094Populus RhizosphereHAQRRNTMKTLICAVVALSVLSGYAGSAMADKVPPSIWEQLDRDGRGGHPT*
Ga0111539_1069952713300009094Populus RhizosphereMKTVISALVALSVVSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0111539_1150553723300009094Populus RhizosphereSALLALSVLTASAASAMADKVPPWIWEQLDRDGHGAVSDLS*
Ga0111539_1238520523300009094Populus RhizosphereMKTVICALVVLSIMSGYAASAFADKVPQSIWEQLDREGRGGHP
Ga0075418_1045154413300009100Populus RhizosphereMKTLLSAFLALSVLSGYAATAMADKVPPSIWEQLDRDGRGSHPT*
Ga0075418_1216754313300009100Populus RhizosphereMSALLALSVVSGYAATAFADTVPQSIWEQLDREGRG
Ga0075418_1224109023300009100Populus RhizosphereMKTLICAVVALSVLSGYAASAIADKVPPSIWEQLDRDG
Ga0105091_1012651523300009146Freshwater SedimentMKTLVAALVALSVLSGYAASALADKVPQSIWEQLDRDGRGGRPT*
Ga0111538_1110473333300009156Populus RhizosphereMKTLLSAFLALSVLSGYAAKAMADKVPPSIWEQLDRDGRGGHPT*
Ga0111538_1285861323300009156Populus RhizosphereLSIMSGYAASAFADKVPQSIWEQLDREGRGGHPA*
Ga0105104_1060601013300009168Freshwater SedimentMKTVISALVALSIMSGYAASAFADKVPQSIWEQLDREGRGGHPA*
Ga0105030_12853723300009987Switchgrass RhizosphereMIMRTIVSALVALSVLSGSAAVAFAEKAPRSIWEQLDREGRGGTTT*
Ga0126380_1002234153300010043Tropical Forest SoilMLAARAQIRRNAMKMLISGLVALSVLSGYGASALADKVPQSIWEQLDRDGRGGHLI*
Ga0126380_1015276333300010043Tropical Forest SoilMKTLISALLALSVLSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0126380_1127941113300010043Tropical Forest SoilLRRIAIKALFSALLALSLLSGYAASAFADQAPKSIWDELDRDGRGGHPT*
Ga0126384_10000111323300010046Tropical Forest SoilMKALLSALLALSLLSGYAASAFADQAPKSIWDELDRDGRGGHPT*
Ga0126382_1005776163300010047Tropical Forest SoilLRIIAMKTVISALVALSVLSGYAASAFADKVPQSIWEQLDREGRGGHPT*
Ga0126382_1029548623300010047Tropical Forest SoilMKMIVSAFLALSVLTGYAASALADKVPPAIWEQLDREGHAS*
Ga0126382_1069049813300010047Tropical Forest SoilMKTLIPALLALSVLLSVLGTLSVLSGYAASALADKVPPSIWEQLDRDGHPG*
Ga0126382_1073043433300010047Tropical Forest SoilALSVLLGYAASAMADKVPPSIWEQLDRDGRGGHPT*
Ga0126382_1102270313300010047Tropical Forest SoilMKTILSALVALAVLSGSAASALADKVPASIWEQLDREGHSRSS*
Ga0126372_1031676823300010360Tropical Forest SoilMSMKTLIPALLALSVLLSVLGALSVLSGYAASALADKVPPSIWEQLDRDGHAG*
Ga0126372_1070522823300010360Tropical Forest SoilMKTVISALVALSVLSGYAASALADKVPQSIWEQLDREGRGGHPT*
Ga0126377_1011006433300010362Tropical Forest SoilMKIMISALLALSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT*
Ga0126377_1036606823300010362Tropical Forest SoilMKTLMSGLVALAVLSASAASALADKVPQSIWEQLDREGHARSN*
Ga0126377_1092881623300010362Tropical Forest SoilMKMVISGLVALSVLSGYGALALADKVPQSIWEQLDRDGRGGRLN*
Ga0126377_1283827223300010362Tropical Forest SoilMKAILSALVTLSVLLGTTAAALADKVPPSIWEQLDRDGHGGRPT*
Ga0126377_1309548113300010362Tropical Forest SoilLMSVLVALAVLSASAAAALADKVPQSIWEQLDREGHGRSN*
Ga0126383_1232775523300010398Tropical Forest SoilMKTIISALVALSVLSGYAASAFADKVPQSIWEQLDRDGRGGHPT*
Ga0134122_1000793263300010400Terrestrial SoilMKTLISAVLALSVLSSYAAAAMADKVPPSIWEQLDRDGRGGHPT*
Ga0124844_132090113300010868Tropical Forest SoilLVSVLAGLAILSGYAASVLADKVPPSIWEQLDRDGHAG*
Ga0157353_103525533300012496Unplanted SoilMSALLALSVVSGYAATALADTVPQSIWEQLDREGRGGHPT*
Ga0132258_1013608053300015371Arabidopsis RhizosphereMKTLISALLALSVLTASAASAMADKVPPWIWEQLDRDGHGAVTDLS*
Ga0132258_1137645343300015371Arabidopsis RhizosphereMKSVISALVALSVLSGYAASAAADKVPQSIWEQLDREGRGGHPT*
Ga0132256_10212333833300015372Arabidopsis RhizosphereMKTLISALLALSVLTASAASAMADKVPPWIWEQLDRDGHGAV
Ga0207685_1054935023300025905Corn, Switchgrass And Miscanthus RhizosphereMKTVISALLALSVLSGYAASAFADKVPQSIWEELDRDGRGGHPT
Ga0207669_1180022513300025937Miscanthus RhizosphereMKTVISALVALSALSGYAASAFADKVPQSIWEQLDREGRGGHPT
Ga0207678_1179724813300026067Corn RhizosphereMKTLISAVLALSVLSSYAAAAMADKVPPSIWEQLDRDGRGGHPT
Ga0207675_10027687233300026118Switchgrass RhizosphereMKRIISALLVLSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT
Ga0209466_110838523300027646Tropical Forest SoilMKTLIPALLALSVLLSVLGALSVLSGYAASALADKVPPSIWEQLDRDGHPG
Ga0209074_1014298933300027787Agricultural SoilMKTVISALVALSVLSGYAASAFADKVPQSIWEQLDREGRGGHPT
Ga0207428_1002199553300027907Populus RhizosphereMKTIMSALLALSVVSGYAATAFADTVPQSIWEQLDREGRGGHPT
Ga0207428_1031046223300027907Populus RhizosphereMKTLICAVVALSVLSGYAASAIADKVPPSIWEQLDRDGRGGHPT
Ga0207428_1041422623300027907Populus RhizosphereMKTLISALLALSVLTASAASAMADKVPPWIWEQLDRDGHGAVSDLS
Ga0207428_1045713833300027907Populus RhizosphereMSALLALSVVSGYAATAFADTVPQSIWEQLDREGRGGHPT
Ga0307480_100804933300031677Hardwood Forest SoilMKTIMSALLALSVVSGYAATALADTVPQSIWEQLDRDGHGAVTDLS
Ga0307480_100895943300031677Hardwood Forest SoilMKTVVSALLALSVLSGYAASAFADKVPQSIWEELDRDGRGGHPT
Ga0307480_102426633300031677Hardwood Forest SoilMKTVISALVALSVVSGYAASAFADKVPQSIWEQHDRDGRGGHPT
Ga0307469_1006884333300031720Hardwood Forest SoilMKTLLSAFLALSVLSGYAAKAMADKVPPSIWEQLDRDGRGGHPT
Ga0307468_10004249923300031740Hardwood Forest SoilMKTVICALVVLSIMSGYAASAFADKVPQSIWEQLDREGRGGHPA
Ga0307468_10026229233300031740Hardwood Forest SoilMKTVISALVALSVLSGYAASAFADKVPQSIWEQLDREGRGGHLT
Ga0307473_1037877613300031820Hardwood Forest SoilKTLISALLALSVLTASTASAMADKVPPWIWEQLDRDGHGAVTDLS
Ga0307473_1058816833300031820Hardwood Forest SoilMKTLISALLALSVLTASTASAMADKVPPWIWEQLDRDGHGAVT
Ga0310892_1055671333300031858SoilMKMLISAFLALSVLSGYAASALADKVPPSIWEQLDRDGRGGHPT
Ga0310890_1123594123300032075SoilMKTVISALVALSVLSGYAASAFADKVPQSIWEQLDRDGRGGHPT
Ga0307470_1020414013300032174Hardwood Forest SoilMKTVICALVVLSIMSGYAASAFADKVPQSIWEQLDPEGRGGHPA
Ga0307470_1092622723300032174Hardwood Forest SoilMKTVISALVALSVVSGYAASAFADKVPQSIWEQLDRDGRGGHPT
Ga0307471_10128359233300032180Hardwood Forest SoilMKTLFSAVLALSVLSSYAAAAMADKVPPSIWEQLDRDGRGGHPT
Ga0307472_10039908623300032205Hardwood Forest SoilMKTLISALLALSVLTASAASAMADKVPPWIWEQLDRDGHGAVTDLS
Ga0307472_10091317523300032205Hardwood Forest SoilMSALLALSVVSGYAATALADTVPQSIWEQLDREGRGGHPT
Ga0373950_0117692_196_3303300034818Rhizosphere SoilMKTLICTVVALSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT
Ga0373959_0090668_7_1173300034820Rhizosphere SoilVALSVLSGYAASAMADKVPPSIWEQLDRDGRGGHPT


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