Scaffold Ga0078894_11143491

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_11143491
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 662
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F049617	Metagenome / Metatranscriptome	146	Y
F050154	Metagenome / Metatranscriptome	145	Y
F059952	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_111434911	F049617	GGA	MMMNAEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQAIEDESEEAMDSM
Ga0078894_111434912	F050154	GAG	MKIHLISLNQDLDKDLNVESKINIQGQIMATEHLLSVATDIMNDNLQGKGY*
Ga0078894_111434913	F001460	GAGG	MLGYTENDLNRMINAIHDAKLFYLRYPSDLMDKTELRNDLEMAVSFMQGLWAEGYFDYTN
Ga0078894_111434914	F059952	N/A	LDEGQYYADKQFAEMSGDEFIYNEFNKFYNLKEGDEDYLC*