Scaffold Ga0078894_10464445

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10464445
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1139
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009530	Metagenome / Metatranscriptome	316	Y
F038479	Metagenome / Metatranscriptome	166	Y
F085708	Metagenome / Metatranscriptome	111	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_104644451	F085708	AGG	MNRLLTTLVQLSIALPALYMGRMMWREIVADFREWDKSH*
Ga0078894_104644452	F009530	N/A	MGELIMTITYSIWQGSRLLSIDNVATDVKEIDNLIKSLNDSELGKKTKFSANVQTIKVGN
Ga0078894_104644454	F087194	AGG	MTLDEYKQLVEAQRLASLSVALEALTKSKAIAEEMNK*
Ga0078894_104644455	F038479	AGGA	MTSLTLEQKISKAAHMLANGEVVSFRGASFDTYMKVERLANRIKQEREFPQCPCGECD*