Scaffold Ga0078894_10187059

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10187059
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1872
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F004840	Metagenome / Metatranscriptome	421	Y
F009143	Metagenome / Metatranscriptome	322	Y
F009530	Metagenome / Metatranscriptome	316	Y
F048252	Metagenome / Metatranscriptome	148	Y
F105172	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101870591	F009530	AGAAG	MTITYSIWQGSRLLSIDNVAYEIKAIDHLMDTLNASELGKKVKFSANIQSIKTGDNK*
Ga0078894_101870592	F009143	AGGAG	MMTKWDTIQADVSDAYVYLDEEEMYNKALEEGLIELGSDEYDEDELSKSLTLDWND*
Ga0078894_101870593	F105172	GGA	MTIELNDYGFVFDTYVCYIALSWQFLAPATIALIAYKIYKRKKNK*
Ga0078894_101870597	F000447	AGGA	MGYIEIFRINEEGAGWVDLSEATPEEMLDLEIGLFQEGAL*
Ga0078894_101870598	F004840	AGG	MYKLTCAYDSNAPHWSAEYENEYGAWENFFLFTDWGMANEYSTVNLYTPTGKCYTKVFYRSGMVAVK*
Ga0078894_101870599	F048252	GGTGG	MMTRKDYIATAEILKYVSNKTHPAVFSKMVNDFAEMFAKDNE