Scaffold Ga0074649_1004594

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1004594
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12578
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007248	Metagenome / Metatranscriptome	355	Y
F031469	Metagenome / Metatranscriptome	182	Y
F088939	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100459419	F088939	N/A	MAKKKFPDLTGDGKVTKADVLKGRGVFAMGGPVEVKADDSVDTVGNPKGKKKSIQIAGWGKARH*
Ga0074649_100459420	F031469	N/A	MIKKIKQKVCELICKVFGITQCLCSHECNCKKEAKNG*
Ga0074649_10045947	F007248	AGGAGG	MANTTFTGPVTALNGFIGGANINSGGTGANDTQQGGNVAWTVSNASTVTIATGTRAGEELSAVGNGGVMIYVADGFSNAPTYAFSNGTQWIRLNTTSVAISTTA*