Scaffold Ga0066706_10075405

Overview

Basic Information

• Taxon OID: 3300005598
• Scaffold ID: Ga0066706_10075405
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2375
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006853	Metagenome / Metatranscriptome	363	Y
F060118	Metagenome / Metatranscriptome	133	Y
F064873	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066706_100754051	F064873	AGGAG	MPPAKRRVVATQTPEVLHAQEAPVPQRRVGRPPGEASTIVNVRLPLSLVARLDRYLARLEQQTGLKANRGMMARRALELFLLSHEEAASPSKRARRQPCPDAPFVPVRKRRTSTRPQVQ*
Ga0066706_100754052	F006853	AGGAG	MNLVIELDTEGRIWVSGFDGTDPEEAWLQGADDTPDVLRASGLCPLEEKYTVGRWTSTTLDQREIAGQLWVEFSH*
Ga0066706_100754055	F060118	N/A	HFSEDALPTLDTFLKRAKEARVFRRAQAVRDVVQGQRLQTVSETLHFTY*