Scaffold Ga0049081_10027121

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10027121
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2175
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F022400	Metagenome	214	Y
F034906	Metagenome	173	Y
F072283	Metagenome / Metatranscriptome	121	N
F103146	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100271213	F072283	AGG	MQTMQDLIEAIKPILPNALVIDTDSGILIETNLELGLGGLLQTIEREGE*
Ga0049081_100271214	F006842	GAGG	MKATPAICGDHLVPISECDCVNYLQELKTSAKRLVQLAKEREEMK*
Ga0049081_100271215	F103146	AGGAG	MAEPRYLMGDDYALNGVEGEEEEIGDAGLPDRMWEDED*
Ga0049081_100271217	F011646	GGAGG	MSNVLELRNGSVKRIIFYEVSDGQNIAIWGGESALEALKWYRNSPTGSKIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV*
Ga0049081_100271218	F034906	AGGTGG	MKNTHRVKAAADQAVRQRNYRRARERALTRLANDYPSLYRSYLEEEKKADEKMGKKWLDIDGNTKPTVSGSR*
Ga0049081_100271219	F022400	AGG	MRKTAIERSQRPTLRLVSGGREESGPALSLFGPLKVGLITMQKTKEDQVLTELLNSLERKIVELSIRSCEVLNIFLSDTEHLAKQKVSFSSIDIINE*