Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10000557 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10000557 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30303
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (3.39%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30303

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (3.39%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F033362	Metagenome	177	Y
F037637	Metagenome	167	Y
F049571	Metagenome	146	Y
F050223	Metagenome	145	Y
F104496	Metagenome	100	N
F105026	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000055710	F037637	N/A	MNWTSKQKRTKQVQLSFEWTDKTDLRLILDDVRALILSGVESYHEQKKSLEIADKWHNVEFQQSYIEKIHEQVESDINGELKLVIKSRF*
Ga0068876_1000055727	F049571	N/A	MNPEVNQEIQELKKQIKELKQLVDALIAVTDEGGTVNADSLVIKMLKLKLK*
Ga0068876_100005573	F033362	N/A	MIPITQFIEVIKKQGAIGVLALWLAYTHFEVQDVKDRLYNCLDKNEYYNRKPIEERQPLPIIKNDTVAVLDNKSRKLAQK*
Ga0068876_1000055746	F050223	N/A	MIQLILELLKSDDFFGVSEIVDVAKGKHELTGNIKKIYKQEKRKLWLKKERLN*
Ga0068876_100005576	F024535	N/A	MAKKKITVNTDNIDVNLEKDGTNIKLDIDSKNVDIHVLKDEVNKEFKLDSKNIDIDISKTAEGLEVKVESKGGIWKLIAKRVVKFILRRFKIGK*
Ga0068876_100005578	F104496	N/A	MKKRTGILINSIIILLGYTYESYLLLAIGAICLSLVLISKTKNYESKR*
Ga0068876_100005579	F105026	N/A	MKAKDNTYYPHRPNVEYLKRKWMNKICPEDKGGSFNEKLYKDYLDAIINYTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10000557

Overview

Ecosystem & Geography

Associated Families

Sequences