Scaffold Ga0070707_100000047

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000047
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105077
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (65.49%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002500	Metagenome / Metatranscriptome	553	Y
F005700	Metagenome / Metatranscriptome	392	N
F007213	Metagenome / Metatranscriptome	355	N
F007216	Metagenome / Metatranscriptome	355	Y
F007915	Metagenome / Metatranscriptome	342	Y
F009672	Metagenome / Metatranscriptome	314	N
F023823	Metagenome	208	N
F030030	Metagenome / Metatranscriptome	186	Y
F036630	Metagenome	169	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F061700	Metagenome / Metatranscriptome	131	Y
F073400	Metagenome	120	Y
F075928	Metagenome	118	N
F088676	Metagenome / Metatranscriptome	109	Y
F088687	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_100000047100	F046962	N/A	MEEIASRGYPIETTSQPVSPDTLTDDQLKDLLAELISSSASLNVRVWLDGVYTDIENTGGRREWMKGREVYFKVEGKVDGKNGPEDPSPGRI*
Ga0070707_100000047105	F005700	AGGTGG	LTYRTEYTLGFLALLPLLATGVAKGTGWLVTIIVVYVGVPLLIWSLLVDRLASFVLRIICRLRESSGHQYYFERQVGKPGISRRLLRDIRVLVFVFFLSALIVPQVTQVNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAIAMGGSLDRAISLGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAITMARLFPQVSAPSLPSPSAPTLRSAIVTEQTKQTTEPHS*
Ga0070707_100000047106	F007915	GAG	MPNIMSLAEAAKPALPSSTIRSYAMIGIVLYAFGLVLNEIGNGLSQLWLVPYADTISALGFVIALYTATLAGLGTRLTVLIGLIYGIGIFYVSEPDSTYLASGFKIGSYTHDVGLGLIGFTMIFLIALAFYLTRAKAAHGSPSRQDPGSAS*
Ga0070707_10000004719	F002500	N/A	LPITFDDIELSVIAALIGLAVTLPVTYLIVDRIIDNNEKKKLVPVEKLAKERLRSKLGVGFLTTFLITLVIDVTSASREKSPIPKDVLLLHIEKLKTAQSDLETLLGVYSNVLGVEISRMTTDVVLQIEHLQEDFEYLAETQPRPPTESHASHMEQVLLKTVHLTKGELIALGTDDTQIRALEDWLTQYTREGRPSPKKEQPIAVRGGHTI*
Ga0070707_10000004728	F007213	GAG	MVATFQDTVGYCFRSTLETMGTSVRDVVYDHLRRKGIPESEIPIQFDDVVRVLDESFGGSARVIIYKTLVELYQQYSMRIDFTYQESLRDHMSLLRERVVVDHIIPKRARIEDSRLEGRLSLV*
Ga0070707_10000004738	F036630	AGG	LATQRPAVTTGLILGVLAFQILVLVILVFFPHIPDPGLFNLNTDIYFLLSPLSTIFLLELLYAWLLRIAAKQATRYSSRARSIARFLSEPFQKILASVGARSLSESAKTFKILSRPRLLLIISIATSILLAFVPYRPDLNPAGTLVGVDSPIYVTWISQMLARPVPQALQYSFVGGLDGSRPLLLIILYIVASLGVSPTQIIEYLQMVLAPLLTLSTYAFVRFGQGNANFAALTALFTPFSFYLPVGLWGGYYANMAALVLAYLFLTLLLLFSKSPSAAKYVAMFALSVALFLTHPWTWALITTTGLVFALSLWRETHLTIHLKSIAGILITGVALDILKSTLFATRSVAADLATKLPTSGQVSTFWINLVDGLLYTHSGLLASWIILGVGLFACFALRFKDRFERLILLWVATASIPFLILDSYNQTRIVYDLPIPVLMATAILFFLPLIGNRKVRWPGIIILLILVTCANYALQGILLL*
Ga0070707_10000004742	F075928	N/A	MSSGIDELIAALPRVSDEQLEAWFTMVVKTKTELVEAKRFLNGPLTRFHRSLLAQIREREERRNQIE*
Ga0070707_10000004743	F088676	AGG	VIVTVLNDGPQDENVDGLVVRLILVGLLVVVFIVIGPATFGAHLNESPALPELLVPPLPEKVILRGFADQRAFGVPAEAKPTAA*
Ga0070707_10000004766	F007216	N/A	VALVLPSIALWRLLKHKASITGVRAGNLVRLNIYFLSSILFDIFRNLGYSWAAFGSGVSSGLVFGVIGLTAASLYFCPECNTLREAWSKLKSRRSLLVYEGVVFAWVGLNLSLPVLFLPFTLVLLSVATVYPTSLFLSARRRARPPHVRNSMALLSVTWALFVTIGTLLFALGAQPPVLPVSVPYGWEIAYITGSVLFFLMSTADAFTLSAVRFSSGQLVPETIVKPGHRYLILHDSGKRAITFLSSTLKGLIDSGARVVINASNNGWLVGNLSLYESRFNEWKQNGRVVVSENVVGHSFPHEGLTDRLSYGPTSTVFVNELGQENLEGVVSPQDSGSSERHQEPAELFLLESSKAPRPQLTEFLRRNTGMELLNLSESTDPFSSLVDLDHQKIRGSIVLLEYETSSDYEGVVDKFLAEGISNAELCVLFTTKSSKLYRAIKGKRMIKIIAASSLISVPDELPDGEMQIPDKELGLVAAVLSDFIDNSKNSGASFVFDSITELIRGERWEQVYSGIKQLIDLLSVPNATTLFLANVNTLDPRFLGALHGAFALQLRLDDNGLRAIKVPTN*
Ga0070707_10000004776	F009672	AGG	VSARLLDTSPRWLSLTLGCSAGVLIIAGIGFFFGQLALFDITPYTLLLHLVLSLAVSSSILNLRINIKPERKPLLAVGVAVVVGSIWSSVQQWIGYFQTGTVSDIILIAGATLMDIAGGCVIYSLFHLNVLKNKSSV*
Ga0070707_10000004783	F073400	GAGG	MRSDQLKRFLNSDVVGQLTNGLFFEGHVQDRSGKARVFDQQGEVPRRISAIRVRWLAKAVRHC*
Ga0070707_10000004785	F023823	GGAGG	MELADESKSAFDQALVDSTIAALDALGPTVKESIFLLLQRRNSITPDEIPKLVGEFVKALQEVLGPTSRVVEKLIIAGLIARRQVPANMAQGRSLLEVVGSIRLSQVSQS*
Ga0070707_10000004793	F061700	N/A	MCDKCHRFFVINYEKNEKGEVVEVGHELDIRVKSSGVVRVEGDEQQEGSERNPPIRKYQEETCW*
Ga0070707_10000004797	F088687	GGAG	MSDKVDRRQRVAFADDSSDENLRGSIIKGKQALAVKENDFKWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATIKSK*
Ga0070707_10000004798	F030030	GGAG	MAKFIMSIGDNAYDILSNEAKNRDVTVQQLLRAVVVPDWIRQNADGQPPAEQRSNLLQQSIYRRDSRDSQMLVSPVARLRH*
Ga0070707_10000004799	F042845	GGAGG	METRKWKAFLRMNGETAVDSGQDIMTEFRAMVEYLKWIGVDYSMVVQVESDQPERVQSLAFEQAPRRRETEQPGA*