Scaffold Ga0070683_100000651

Overview

Basic Information

• Taxon OID: 3300005329
• Scaffold ID: Ga0070683_100000651
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25067
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035787	Metagenome	171	Y
F054118	Metagenome	140	Y
F059082	Metagenome	134	Y
F064831	Metagenome	128	N
F100527	Metagenome	102	N
F101397	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070683_10000065112	F054118	N/A	VSAAEADDPAAFGADADALLDLIKPLLAGQSPELQGAVINDLAAIWIAGHRVPGDRGEGDRTREELLRMHAEHVRELVAMYVGDADG*
Ga0070683_10000065120	F100527	GGA	MIATLCLVVALAFALLSATGVPEHPRWRHLPAAIAFLVLALLLARLPWMPP*
Ga0070683_10000065121	F059082	GGA	MTLAEVLAAVDRDSRDALVLAVEDALAGHEAPEVFIVCCYFTALAIARMPCGDCDALLDDMPRILRGVIASELETVTRQ*
Ga0070683_10000065133	F101397	N/A	MISARDTLIGAKMDLNDTRLRVRLDTMPEKLRRRLVATIGRLTNELLHKVEAREPHRTGRLRSLTEDYVDDNRIKNFVRGRVRVLRLREHNTAAAAGALEYGSTGKRFPVSGYVRRGARVRGYQRAGGITEMRFLRGPAAAMLPKARAELRRVLQDL*
Ga0070683_10000065136	F064831	AGGAG	MATATINIGANPNIEGTLKFVGANDIGPQVEMTLTSVQFGPAAALNLIGDEYGLIELEGRVLLVDGSFGIMTHPDDALVSPNVLGYYVGTGLVSWQAAGDSTFAELGNCNRFEFEQTIERLDHMQHMNGIRSLDYSPIVQQSAVVRLTLDEWTVPNLQMYLLDVAAVVVP*
Ga0070683_1000006519	F035787	GGCGG	VTTQLERTLQTEILYRLARYPVVACAVPNGIWLPAHNENERAVVARLMARMKSDGMLTPGAPDLVIMGEKRAVCVELKRPVSRDLFGRKPRGRLSPEQRAFRDRCVDCGVEYLVAECWEDIEAVLPELY*